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Report for CCDS25947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25947.1 Public Mus musculus 12 Mgat2 23 108 98 CCDS HistoryNCBI Gene:217664Re-query CCDS DB by CCDS ID:25947.1Re-query CCDS DB by GeneID:217664See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060579.9 ENSMUSP00000057905.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060579.9Link to Ensembl Protein Viewer:ENSMUSP00000057905.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060579Re-query CCDS DB by Protein ID:ENSMUSP00000057905
Original member Current member NCBI NM_146035.2 NP_666147.1 Accepted alive Link to Nucleotide Sequence:NM_146035.2Link to Protein Sequence:NP_666147.1Re-query CCDS DB by Nucleotide ID:NM_146035Re-query CCDS DB by Protein ID:NP_666147Link to BLAST:NP_666147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666147.1 442 Q921V5 442 100% 0 0

Chromosomal Locations for CCDS 25947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69184654 69185982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGAGGTTCCGCATCTACAAACGGAAGGTGCTAATCCTGACGCTCGTGGTGGCCGCCTGCGGCTTCGTCC
TCTGGAGTAGCAATGGGCGACAAAGGAAGAGCGACGCCCTTGGCCCGCCGCTGCTGGACGCGGAGCCCGT
ACGGGGTGCGGGCCACCTTGCTGTGTCCGTAGGCATCCGCAGGGTCTCAAACGAATCGGCCGCTCCTCTG
GTTCCCGCGGTCCCGCGGCCGGAGGTGGACAACCTAACGCTGCGGTACCGGTCCCTGGTGTACCAGTTGA
ACTTCGATCAGATGCTGAGGAACGTCGGTAATGACGGCACCTGGAGCCCCGGGGAGCTGGTGCTGGTGGT
CCAGGTGCATAACAGGCCGGAATACCTCAGGTTGCTGATAGACTCGCTTCGCAAAGCCCAGGGTATTCAG
GAAGTCCTAGTCATCTTTAGCCATGACTTCTGGTCCGCAGAGATCAACAGTCTGATCTCCAGGGTGGATT
TCTGCCCGGTTCTGCAAGTGTTCTTTCCGTTCAGCATTCAGCTGTACCCGAATGAGTTTCCGGGTAGTGA
CCCTAGAGATTGCCCCAGAGACCTAAAGAAGAATGCAGCTCTGAAGTTGGGGTGCATCAATGCCGAATAC
CCTGACTCCTTCGGCCATTACAGAGAGGCCAAGTTCTCACAAACCAAACACCATTGGTGGTGGAAGCTGC
ATTTTGTATGGGAAAGAGTCAAAGTTCTTCAAGATTACACTGGCCTTATACTCTTCCTGGAAGAGGACCA
CTACTTAGCCCCAGACTTTTACCATGTCTTCAAAAAGATGTGGAAACTGAAGCAGCAGGAGTGTCCTGGG
TGTGACGTCCTCTCTCTAGGGACCTACACCACCATTCGGAGTTTCTATGGCATTGCTGACAAAGTAGATG
TGAAAACTTGGAAATCGACAGAGCACAACATGGGGCTAGCCTTGACCCGAGATGCATATCAGAAGCTTAT
CGAATGCACGGACACTTTCTGTACTTACGATGATTATAACTGGGACTGGACTCTTCAGTATTTGACTCTA
GCTTGTCTTCCTAAAATCTGGAAAGTCTTAGTTCCTCAGGCTCCTAGGATTTTTCATGCTGGAGACTGTG
GTATGCATCACAAGAAAACATGTAGGCCATCCACCCAGAGTGCCCAAATTGAGTCATTATTAAATAGCAA
CAAACAATACCTGTTTCCGGAAACTCTAGTTATCGGTGAGAAGTTTCCTATGGCAGCCATTTCCCCACCT
AGGAAAAATGGAGGGTGGGGAGATATTAGGGACCATGAACTCTGTAAAAGTTATAGAAGACTGCAGTGA

Translation (442 aa):
MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKSDALGPPLLDAEPVRGAGHLAVSVGIRRVSNESAAPL
VPAVPRPEVDNLTLRYRSLVYQLNFDQMLRNVGNDGTWSPGELVLVVQVHNRPEYLRLLIDSLRKAQGIQ
EVLVIFSHDFWSAEINSLISRVDFCPVLQVFFPFSIQLYPNEFPGSDPRDCPRDLKKNAALKLGCINAEY
PDSFGHYREAKFSQTKHHWWWKLHFVWERVKVLQDYTGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPG
CDVLSLGTYTTIRSFYGIADKVDVKTWKSTEHNMGLALTRDAYQKLIECTDTFCTYDDYNWDWTLQYLTL
ACLPKIWKVLVPQAPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNSNKQYLFPETLVIGEKFPMAAISPP
RKNGGWGDIRDHELCKSYRRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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