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Report for CCDS25978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25978.1 Public Mus musculus 12 Snapc1 23 108 98 CCDS HistoryNCBI Gene:75627Re-query CCDS DB by CCDS ID:25978.1Re-query CCDS DB by GeneID:75627See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021532.5 ENSMUSP00000021532.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021532.5Link to Ensembl Protein Viewer:ENSMUSP00000021532.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021532Re-query CCDS DB by Protein ID:ENSMUSP00000021532
Original member NCBI NM_178392.5 NP_848479.1 Updated not alive Link to Nucleotide Sequence:NM_178392.5Link to Protein Sequence:NP_848479.1Re-query CCDS DB by Nucleotide ID:NM_178392Re-query CCDS DB by Protein ID:NP_848479
Current member NCBI NM_178392.6 NP_848479.1 Accepted alive Link to Nucleotide Sequence:NM_178392.6Link to Protein Sequence:NP_848479.1Re-query CCDS DB by Nucleotide ID:NM_178392Re-query CCDS DB by Protein ID:NP_848479Link to BLAST:NP_848479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848479.1 389 Q8K0S9 389 100% 0 0

Chromosomal Locations for CCDS 25978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 73964562 73964746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73967908 73968067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73968239 73968379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73969527 73969631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73970181 73970339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73971885 73971953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73972537 73972599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73975011 73975161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73982478 73982579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73983863 73983897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGGGACTCCTGCGGGCGCCGGGACCCGTCCCACGGGCGCTGGAACTGTTGAAGGCGTGGGGATCCCTC
CGGGCCTGCAGACTGACTACGAGACGCTGCTCAGCCGCTTCCAAGAGATGGACAGCGTGCGCTTCGAGGA
CTTCACGGAGCTCTGGCGCAGCATGAAGTTCGCGACCATCTTCTGTGGCAAAATGAGGAATTTAAAAAAG
AACATGTTTACAAAGGAAGCTTTAGCTTTGGCGTGGCGCTACTTTTTGCCTCCACACACGTTCCAGATCA
GAGTTGGCGCTTTGTATCTTCTGTACGGGTTGTACAACACACAGCTGTGCCAGCCGAAACAAAAGATCCG
AGTTGCCTTGAAGGACTGGGATGAAGTCATCAGGTTTCAGCAAGACTTGATGAACGCACAGCATTTCGAC
GCGGCTTTTGTTTTCAGGAAGCTTCGGCTGGACAGAGCCTTCCACTTCACAGCTATGCCCAAGCTGCTTT
CGTGTAGAATGAAGAAAAAAGTTCAACAAACTGAAGTGACACAGAAATTTAAGGACCCGAATGATCGTGT
AATGAAACTTATCACTTCTGATGTATTAGAGGAAATGCTGAATGTTCACGATCATTATCAAAATATGAAG
CATGCTATTTCAGCAGACAAGTCCATGCCAGACAGAGCTCTCAGTCTGGTAAAGGAGGACTTTTTTGAGA
ACATTAAGAACATAGTTTTGGAGCATCAGGAGTGGCACAAGGAACGGAAGAATCCCTCCTTAAAACCCAA
ACTTAAAGATGGAGAAGAGAACGGTGAAGGCTCTTCAGAGGAGCCAGAGAGATGTGAGAGAGCTGTGTCT
TTAGCGAAAATAAAAGCGAAAGCCTTTTCAGCTGTTGTCCCGGTGTCCAAGTCCAGGAGGCATCGCCAGT
CCAAGCTTGACTCTTCTGACTCTGACTCTGGGTCTGGACAAGTGCAAGGCAGAGCAGCTAAGAGAAAGAG
AACCAGAGAACCAGCAGGACCAGCAGGAAGGAAGAGATCTTCCAGAAGCAAAGGTAACGCTCCGAATGAA
CGTAAGGAAGAGAAGTCGTTACACCTGAGTATGCCTATTATTACAGAGGAGGAGGAGGAGGACATGGGTG
GCGTCAGAAAAGCAGAGTTCACTGCGCCCAAGAGGAAGAGAAAATGCTGA

Translation (389 aa):
MGTPAGAGTRPTGAGTVEGVGIPPGLQTDYETLLSRFQEMDSVRFEDFTELWRSMKFATIFCGKMRNLKK
NMFTKEALALAWRYFLPPHTFQIRVGALYLLYGLYNTQLCQPKQKIRVALKDWDEVIRFQQDLMNAQHFD
AAFVFRKLRLDRAFHFTAMPKLLSCRMKKKVQQTEVTQKFKDPNDRVMKLITSDVLEEMLNVHDHYQNMK
HAISADKSMPDRALSLVKEDFFENIKNIVLEHQEWHKERKNPSLKPKLKDGEENGEGSSEEPERCERAVS
LAKIKAKAFSAVVPVSKSRRHRQSKLDSSDSDSGSGQVQGRAAKRKRTREPAGPAGRKRSSRSKGNAPNE
RKEEKSLHLSMPIITEEEEEDMGGVRKAEFTAPKRKRKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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