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Report for CCDS25987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25987.1 Public Mus musculus 12 Esr2 23 108 98 CCDS HistoryNCBI Gene:13983Re-query CCDS DB by CCDS ID:25987.1Re-query CCDS DB by GeneID:13983See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076634.4 ENSMUSP00000075932.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076634.4Link to Ensembl Protein Viewer:ENSMUSP00000075932.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076634Re-query CCDS DB by Protein ID:ENSMUSP00000075932
Original member Current member NCBI NM_010157.3 NP_034287.3 Accepted alive Link to Nucleotide Sequence:NM_010157.3Link to Protein Sequence:NP_034287.3Re-query CCDS DB by Nucleotide ID:NM_010157Re-query CCDS DB by Protein ID:NP_034287Link to BLAST:NP_034287.3

Chromosomal Locations for CCDS 25987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76121730 76121916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76123147 76123327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76133810 76133943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76141335 76141473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76145244 76145543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76158602 76158718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76165449 76165621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76167257 76167675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGTCCATCTGTGCCTCTTCTCACAAGGATTTTTCTCAGCTGAGACCTACGCAAGACATGGAGATCAAAA
ACTCACCATCAAGCCTTACTTCCCCTGCTTCTTATAACTGTAGCCAGTCCATCCTACCCTTGGAGCATGG
TCCCATCTATATCCCTTCCTCCTATGTAGAGAGCCGTCACGAATACTCAGCCATGACATTCTACAGTCCT
GCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAA
GCCCAAATGTGCTATGGCCAACTTCTGGACACCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCTTCT
CTATGCAGAACCTCAAAAGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACACCTTGCCTGTAAACAGA
GAGACCCTGAAGAGGAAGCTTGGCGGGAGCGGTTGTGCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGG
ATGCTCACTTCTGCGCCGTCTGCAGTGATTATGCATCTGGGTATCATTACGGTGTCTGGTCCTGTGAAGG
ATGTAAGGCCTTTTTTAAAAGAAGCATTCAAGGACATAATGACTATATCTGTCCAGCCACGAATCAGTGT
ACCATAGACAAGAACCGGCGTAAAAGCTGCCAGGCCTGCCGACTTCGCAAGTGTTACGAAGTAGGAATGG
TCAAGTGTGGATCCAGGAGAGAAAGGTGTGGGTACCGAATAGTACGAAGACAGAGAAGTGCCAGCGAGCA
GGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAAGGAGCTACTGCTGAAC
TCTCTGAGTCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAATGTGCTAGTGAGCCGTC
CCAGCATGCCCTTCACCGAGGCCTCCATGATGATGTCCCTCACGAAGCTGGCTGACAAGGAACTGGTGCA
CATGATTGGCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTG
GAAAGCTGCTGGATGGAGGTGCTGATGGTGGGGCTGATGTGGCGCTCCATCGACCACCCCGGCAAGCTCA
TCTTTGCTCCAGACCTCGTTCTGGACAGGGATGAGGGGAAGTGCGTGGAAGGGATTCTGGAAATCTTTGA
CATGCTCCTGGCGACGACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAG
GCCATGATTCTCCTCAACTCCAGTATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGA
AGCTGACACACCTATTGAACGCAGTGACAGATGCCCTGGTCTGGGTGATTTCGAAGAGTGGAATCTCTTC
CCAGCAGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCTTTCTCATGTCAGGCACATCAGTAACAAG
GGCATGGAACATCTGCTCAGCATGAAGTGCAAAAATGTGGTCCCGGTGTACGACCTGCTGCTGGAGATGC
TGAATGCTCACACGCTTCGAGGGTACAAGTCCTCAATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAG
TAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACAGTGA

Translation (549 aa):
MSICASSHKDFSQLRPTQDMEIKNSPSSLTSPASYNCSQSILPLEHGPIYIPSSYVESRHEYSAMTFYSP
AVMNYSVPSSTGNLEGGPVRQTASPNVLWPTSGHLSPLATHCQSSLLYAEPQKSPWCEARSLEHTLPVNR
ETLKRKLGGSGCASPVTSPSAKRDAHFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYICPATNQC
TIDKNRRKSCQACRLRKCYEVGMVKCGSRRERCGYRIVRRQRSASEQVHCLNKAKRTSGHTPRVKELLLN
SLSPEQLVLTLLEAEPPNVLVSRPSMPFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLL
ESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTARFRELKLQHKEYLCVK
AMILLNSSMYPLATASQEAESSRKLTHLLNAVTDALVWVISKSGISSQQQSVRLANLLMLLSHVRHISNK
GMEHLLSMKCKNVVPVYDLLLEMLNAHTLRGYKSSISGSECCSTEDSKSKEGSQNLQSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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