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Report for CCDS26011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26011.1 Public Mus musculus 12 Actn1 23 108 98 CCDS HistoryNCBI Gene:109711Re-query CCDS DB by CCDS ID:26011.1Re-query CCDS DB by GeneID:109711See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021554.15 ENSMUSP00000021554.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021554.15Link to Ensembl Protein Viewer:ENSMUSP00000021554.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021554Re-query CCDS DB by Protein ID:ENSMUSP00000021554
Original member NCBI NM_134156.2 NP_598917.1 Updated not alive Link to Nucleotide Sequence:NM_134156.2Link to Protein Sequence:NP_598917.1Re-query CCDS DB by Nucleotide ID:NM_134156Re-query CCDS DB by Protein ID:NP_598917
Current member NCBI NM_134156.3 NP_598917.1 Accepted alive Link to Nucleotide Sequence:NM_134156.3Link to Protein Sequence:NP_598917.1Re-query CCDS DB by Nucleotide ID:NM_134156Re-query CCDS DB by Protein ID:NP_598917Link to BLAST:NP_598917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598917.1 892 Q7TPR4 892 100% 0 0

Chromosomal Locations for CCDS 26011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80168322 80168480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80168858 80169016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80170686 80170766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80171729 80171875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80172963 80173142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80174080 80174214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80174460 80174642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80176156 80176296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80177188 80177296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80178302 80178452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80181361 80181508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80183393 80183623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80184807 80184899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80192368 80192453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80193636 80193717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80196395 80196473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80196926 80197013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80198981 80199067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80204962 80205081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80209359 80209473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80259987 80260091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2679 nt):
ATGGACCATTATGATTCCCAGCAGACCAACGACTACATGCAGCCTGAAGAGGACTGGGATCGGGACCTGC
TCCTGGATCCGGCCTGGGAGAAGCAGCAGAGGAAGACGTTCACAGCCTGGTGCAACTCCCACCTGCGCAA
AGCGGGGACACAGATCGAGAACATCGAAGAGGACTTCCGAGATGGCCTGAAGCTCATGCTGCTCCTGGAG
GTCATCTCAGGTGAACGCTTGGCCAAGCCAGAGAGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCA
ACAAGGCCTTGGATTTCATAGCCAGCAAAGGGGTCAAGCTGGTGTCCATCGGAGCTGAAGAAATTGTGGA
TGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCC
GTGGAAGAGACTTCAGCTAAAGAAGGGTTACTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATG
TCAACATCCAAAACTTCCACATCAGTTGGAAAGATGGTCTTGGTTTCTGTGCCTTGATCCACCGACACCG
GCCCGAGTTGATTGACTATGGAAAGCTTCGAAAGGATGATCCACTCACAAACCTGAACACGGCCTTTGAT
GTGGCAGAGAGGTTCCTGGACATCCCTAAGATGCTGGATGCTGAAGACATCGTCGGAACTGCCCGGCCAG
ATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAGGCAGAAAC
AGCAGCCAATCGCATCTGCAAAGTGTTGGCGGTCAATCAAGAGAACGAGCAGCTTATGGAAGACTATGAG
AAGCTGGCCAGTGATCTGTTGGAGTGGATCCGCCGCACCATCCCATGGCTGGAGAATCGGGTGCCTGAGA
ACACCATGCATGCCATGCAGCAGAAGCTGGAGGACTTCCGAGACTATAGACGCCTGCACAAGCCGCCCAA
GGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTTAACACGCTGCAGACCAAGCTGCGGCTCAGCAACCGG
CCTGCCTTCATGCCCTCCGAGGGCAGGATGGTCTCGGATATCAACAATGCCTGGGGCTGCCTGGAACAGG
CCGAGAAGGGCTACGAGGAGTGGCTGCTGAATGAGATCCGGAGGCTAGAGAGGTTGGACCACCTGGCAGA
GAAGTTCCGGCAGAAGGCCTCCATCCATGAAGCCTGGACGGATGGCAAAGAAGCCATGCTTCGGCAGAAG
GATTATGAGACAGCCACCCTGTCCGAGATCAAGGCCTTGCTCAAGAAGCACGAGGCTTTTGAGAGTGATC
TGGCTGCCCACCAGGACCGCGTGGAGCAGATTGCGGCCATTGCCCAGGAGCTTAATGAGCTGGACTACTA
TGACTCGCCAAGTGTCAACGCTCGTTGCCAAAAGATCTGTGACCAGTGGGACAATCTAGGGGCTCTCACT
CAGAAGCGGAGGGAAGCTTTAGAGCGAACAGAGAAGCTGCTGGAAACCATCGACCAGCTCTACTTAGAGT
ACGCCAAGAGGGCTGCACCCTTCAACAATTGGATGGAGGGAGCCATGGAGGACCTGCAGGACACCTTCAT
CGTACATACCATCGAGGAGATCCAGGGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCGGAT
GCAGACAAGGAGCGCCTCGCCATTCTGGGCATCCACAATGAAGTGTCCAAGATCGTCCAGACCTATCATG
TCAACATGGCAGGCACCAACCCCTATACAACCATCACGCCTCAGGAGATCAATGGCAAATGGGACCATGT
ACGGCAGCTAGTGCCCCGGAGGGACCAGGCTCTCACAGAGGAACATGCAAGGCAGCAGCACAATGAGAGG
CTACGCAAACAGTTTGGCGCACAAGCCAATGTCATTGGGCCCTGGATCCAGACCAAGATGGAGGAGATTG
GGAGGATTTCCATTGAGATGCACGGCACCCTGGAGGACCAACTCAGCCACCTGCGGCAGTATGAGAAGAG
CATCGTCAATTACAAGCCAAAGATTGACCAGCTGGAGTGCGACCACCAGCTCATCCAGGAGGCACTTATC
TTTGACAATAAGCACACCAACTACAACATGGAGCATATCCGTGTGGGCTGGGAGCAGCTGCTCACCACCA
TTGCCAGGACCATCAATGAAGTGGAGAACCAGATCTTGACCCGGGATGCCAAAGGCATCAGCCAGGAACA
GATGAACGAATTCCGCGCCTCTTTCAACCACTTTGACCGGGATCACTCCGGCACGTTGGGTCCCGAAGAG
TTCAAAGCCTGCCTCATCAGCTTGGGTTATGATATTGGCAACGACCCCCAGGGAGAGGCAGAGTTTGCCC
GAATCATGAGCATTGTAGACCCCAACCGCTTGGGGGTAGTGACGTTCCAGGCCTTCATCGACTTTATGTC
CCGAGAGACGGCAGATACTGATACTGCAGATCAGGTCATGGCTTCCTTCAAGATCCTGGCTGGAGATAAG
AATTACATCACAGAGGATGAGCTGCGCCGTGAGCTGCCCCCTGACCAAGCCGAGTACTGCATCGCAAGAA
TGGCCCCCTACGCGGGCCCCGACTCCGTGCCCGGTGCTTTAGACTACATGTCCTTCTCCACGGCACTGTA
TGGCGAGAGCGACCTCTAA

Translation (892 aa):
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE
VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDIS
VEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFD
VAERFLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYE
KLASDLLEWIRRTIPWLENRVPENTMHAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNR
PAFMPSEGRMVSDINNAWGCLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTDGKEAMLRQK
DYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALT
QKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPD
ADKERLAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWDHVRQLVPRRDQALTEEHARQQHNER
LRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLSHLRQYEKSIVNYKPKIDQLECDHQLIQEALI
FDNKHTNYNMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRDHSGTLGPEE
FKACLISLGYDIGNDPQGEAEFARIMSIVDPNRLGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDK
NYITEDELRRELPPDQAEYCIARMAPYAGPDSVPGALDYMSFSTALYGESDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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