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Report for CCDS26020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26020.1 Public Mus musculus 12 Cox16 23 108 98 CCDS HistoryNCBI Gene:66272Re-query CCDS DB by CCDS ID:26020.1Re-query CCDS DB by GeneID:66272See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002757.10 ENSMUSP00000002757.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002757.10Link to Ensembl Protein Viewer:ENSMUSP00000002757.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002757Re-query CCDS DB by Protein ID:ENSMUSP00000002757
Original member Current member NCBI NM_025461.6 NP_079737.1 Accepted alive Link to Nucleotide Sequence:NM_025461.6Link to Protein Sequence:NP_079737.1Re-query CCDS DB by Nucleotide ID:NM_025461Re-query CCDS DB by Protein ID:NP_079737Link to BLAST:NP_079737.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079737.1 106 Q9CR63-1 106 100% 0 0

Chromosomal Locations for CCDS 26020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81472235 81472351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81474587 81474649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81480931 81481002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81484897 81484965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGATTGCGCCCGCTGTGTTGCGAGCTCTGCGTAAGAACAAGACTCTACGCTATGGAGTTCCCATGTTGT
TGCTGGTTGTTGGAGGTTCTTTTGGTCTTCGTGAATTTTCACAAATCCGGTACGATGCTGTGACAATTAA
GATTGATCCTGAATTGGAGAAAAAATTGAAAGTGAATAAAATAACTTTAGAGTCAGAGTATGAGAAAATA
AAGGACTCCACTTTTGAAAACTGGAAGAATATTCGAGGTCCGAGGCCTTGGGAAGATCCTCAACTCCTCC
AAGGACGAAACCCAGAAACTCTTAAGCCTAAGACAACCTGA

Translation (106 aa):
MIAPAVLRALRKNKTLRYGVPMLLLVVGGSFGLREFSQIRYDAVTIKIDPELEKKLKVNKITLESEYEKI
KDSTFENWKNIRGPRPWEDPQLLQGRNPETLKPKTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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