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Report for CCDS26036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26036.1 Public Mus musculus 12 Acot3 23 108 98 CCDS HistoryNCBI Gene:171281Re-query CCDS DB by CCDS ID:26036.1Re-query CCDS DB by GeneID:171281See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021653.7 ENSMUSP00000021653.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021653.7Link to Ensembl Protein Viewer:ENSMUSP00000021653.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021653Re-query CCDS DB by Protein ID:ENSMUSP00000021653
Original member Current member NCBI NM_134246.3 NP_599007.1 Accepted alive Link to Nucleotide Sequence:NM_134246.3Link to Protein Sequence:NP_599007.1Re-query CCDS DB by Nucleotide ID:NM_134246Re-query CCDS DB by Protein ID:NP_599007Link to BLAST:NP_599007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599007.1 432 Q9QYR7-1 432 100% 0 0

Chromosomal Locations for CCDS 26036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84053452 84053941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84056909 84057111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84058421 84059026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGCACGCATTTACCACCCAGAACCCGAACCGGATGGCACCTACTGTGATCCTGGAGCCCGCGGGTGGTT
GCCTTTGTGACCAGCCGGTGCACATCGCTGTGCGCGGCCTGGCCCCGGAGCAGCCCGTCACGCTGCGCTC
TGTCCTGCGCGACGAGAAGGGCGCGCTCTTCCGAGCCCACGCGCGCTACCGCGCGGACTCCCACGGCGAG
CTGGACCTGGCGCGCACGCCCGCGCTGGGCGGCAGCTTCTCGGGGCTCGAGCCCATGGGGCTGCTCTGGG
CCATGGAGCCCGATCGGCCTTTCTGGCGCCTGATCAAGCGCGACGTGCAGACGCCCTTTGTGGTGGAGCT
GGAGGTGCTGGACGGACACGAGCCCGACGGCGGGCAGCGGCTGGCGCGGGCGGTGCACGAGCGTCACTTC
ATGGCCCCCGGGGTTCGGCGCGTGCCGGTGCGCGAGGGCCGGGTGCGCGCCACGCTCTTCCTGCCCCCAG
GAACTGGACCCTTTCCTGGAATCATAGACCTTTTTGGAATTGGAAGTGGCCTTCTGGAGTATCGGGCGAG
TCTGCTGGCTGGGAAGGGCTTTGCCGTCATGGCTCTGGCTTATAACAACTACGAGGACCTCCCTAAGGAC
ATGGACATTATCCACCTGGAGTACTTTGAGGAAGCTGTGACCTACCTGCTCAGTCACCCTCAGGTAACAG
GTTCAGGAGTCGGGGTCCTTGGCATTTCCAAAGGGGGTGAACTTGGCTTTGCCATGGCCTCCTTCTTGAA
AAATATCACAGCCGCTGTCATCATCAATGGCTCTATATCCAACATCGGCGGAAACTTACAGTACAAGGAT
GAGACTGTGCCCTCCGTGGGCATAAACACCAAGCGAGTCAAGAGAACCAAAGATGGCCTCAAAGACATTG
TGGATCTTCTAAACAATCCTTTGGAAGGACCTGACCAGAAGAGCTTGATTCCCGTGGAAAGGTCTGACAC
AGCCTTCCTGTTCCTCGTAGGTCAGGACGACCACAACTGGAAGAGCGAGTTCTATGCCAGAGAGGCCTCC
AAACGCCTGCAGGCGCACGGGAAGGAGAAGCCCCAGATCATCTGCTACCCAGAGACAGGCCACCATATTG
AGCCTCCTTACTTCCCACTGTGTAAGGCTTCCCTGAACAGCCTGGTGGGTGGTCCTGTCATCTGGGGAGG
GGAGCCCAGGGCTCATGCCATGGCCCAGGTGGACGCTTGGCAGCAACTCCAGACTTTTTTCCACAATCAT
TTGGATGGCAAAAAGAAGACAATCCCAGCAAAACTGTGA

Translation (432 aa):
MHAFTTQNPNRMAPTVILEPAGGCLCDQPVHIAVRGLAPEQPVTLRSVLRDEKGALFRAHARYRADSHGE
LDLARTPALGGSFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFVVELEVLDGHEPDGGQRLARAVHERHF
MAPGVRRVPVREGRVRATLFLPPGTGPFPGIIDLFGIGSGLLEYRASLLAGKGFAVMALAYNNYEDLPKD
MDIIHLEYFEEAVTYLLSHPQVTGSGVGVLGISKGGELGFAMASFLKNITAAVIINGSISNIGGNLQYKD
ETVPSVGINTKRVKRTKDGLKDIVDLLNNPLEGPDQKSLIPVERSDTAFLFLVGQDDHNWKSEFYAREAS
KRLQAHGKEKPQIICYPETGHHIEPPYFPLCKASLNSLVGGPVIWGGEPRAHAMAQVDAWQQLQTFFHNH
LDGKKKTIPAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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