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Report for CCDS26039.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26039.2 Public Mus musculus 12 Dnal1 23 108 98 CCDS HistoryNCBI Gene:105000Re-query CCDS DB by CCDS ID:26039.2Re-query CCDS DB by GeneID:105000See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 26039.1
The coding region has been updated to change the splice pattern reflected by the CDS and extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26039.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123491.7 ENSMUSP00000121038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123491.7Link to Ensembl Protein Viewer:ENSMUSP00000121038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123491Re-query CCDS DB by Protein ID:ENSMUSP00000121038
Original member Current member NCBI NM_028821.3 NP_083097.2 Accepted alive Link to Nucleotide Sequence:NM_028821.3Link to Protein Sequence:NP_083097.2Re-query CCDS DB by Nucleotide ID:NM_028821Re-query CCDS DB by Protein ID:NP_083097Link to BLAST:NP_083097.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083097.2 190 Q05A62-1 190 100% 0 0

Chromosomal Locations for CCDS 26039.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84114397 84114399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84121283 84121321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84124475 84124584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84126962 84127017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84131332 84131387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84135567 84135693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84136497 84136637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84138354 84138394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGCAAAAGCAACAACGATCAAAGAAGCCCTGTCCAGATGGGAAGAAAAGACTGGTCAGAAGCCATCTG
ATGCCAAAGAAATCAAGCTGTATGCCCAGATTCCCCCCATAGAGAAGATGGACGCATCTCTATCCACACT
TGGTAACTGCGAGAAGCTTTCCCTGTCTACAAACTGCATTGAAAAAATTGCCAACCTGAATGGCCTAAAA
AACTTGAGGATTTTGTCCTTAGGAAGAAACAACATAAAGAACCTAAATGGACTGGAAGCAGTAGGAGAAA
CACTGGAAGAACTGTGGATCTCCTACAATTTTATTGAGAAGTTGAAAGGAATCCATGTAATGAAGAAACT
GAAGATTCTCTACATGTCTAATAACCTGGTAAAAGACTGGGCTGAGTTCCTGAAGCTGGCCGAGCTGCCG
TGCCTGGAGGACCTGGTGTTCGTCGGTAATCCCCTGGAGGAGAAACACTCTGCCGAGGGCAACTGGATCG
ATGAAGCAACCAAGAGAGTGCCCAAGCTGAAAAAGCTGGATGGTACTCCAGTAATTAAGGAGGATGAAGA
AGAGGAAAGCTAA

Translation (190 aa):
MAKATTIKEALSRWEEKTGQKPSDAKEIKLYAQIPPIEKMDASLSTLGNCEKLSLSTNCIEKIANLNGLK
NLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLKGIHVMKKLKILYMSNNLVKDWAEFLKLAELP
CLEDLVFVGNPLEEKHSAEGNWIDEATKRVPKLKKLDGTPVIKEDEEEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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