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Report for CCDS26103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26103.1 Public Mus musculus 12 Foxn3 23 108 98 CCDS HistoryNCBI Gene:71375Re-query CCDS DB by CCDS ID:26103.1Re-query CCDS DB by GeneID:71375See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046859.11 ENSMUSP00000036035.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046859.11Link to Ensembl Protein Viewer:ENSMUSP00000036035.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046859Re-query CCDS DB by Protein ID:ENSMUSP00000036035
Original member Current member EBI ENSMUST00000085108.7 ENSMUSP00000082189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085108.7Link to Ensembl Protein Viewer:ENSMUSP00000082189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000085108Re-query CCDS DB by Protein ID:ENSMUSP00000082189
Original member Current member EBI ENSMUST00000177451.7 ENSMUSP00000135082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177451.7Link to Ensembl Protein Viewer:ENSMUSP00000135082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177451Re-query CCDS DB by Protein ID:ENSMUSP00000135082
Original member Current member NCBI NM_183186.2 NP_899009.2 Accepted alive Link to Nucleotide Sequence:NM_183186.2Link to Protein Sequence:NP_899009.2Re-query CCDS DB by Nucleotide ID:NM_183186Re-query CCDS DB by Protein ID:NP_899009Link to BLAST:NP_899009.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899009.2 457 Q499D0 457 100% 0 0

Chromosomal Locations for CCDS 26103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 99196267 99196813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99209461 99209566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99291237 99291301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99341422 99341534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99388361 99388903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGGTCCAGTCATGCCTGCCAGTAAGAAGGCCGAGAGCTCAGGAATCAGTGTGTCCAGTGGACTGAGTC
AGCGTTACCGGGGCAGCGGTTTCTCCAAGGCCCTCCAGGAAGACGATGATCTTGACTTCCCTCTGCCCGA
CATCCGATTAGAAGAGGGGGCCATGGAAGATGAAGAGCTGACCAACCTGAACTGGCTGCATGAGAGCAAG
AACTTGCTGAAGAGCTTTGGGGAGTCGGTCCTTAGGAGTGTCAGTCCTGTGCAGGACCTAGACGATGACA
CCCCACCATCCCCTGCCCACTCGGACATGCCCTATGATGCCAGGCAGAACCCCAACTGCAAGCCCCCCTA
CTCCTTTAGCTGCCTCATATTTATGGCCATCGAGGACTCTCCGACCAAGCGCCTTCCAGTGAAGGACATC
TACAACTGGATCTTAGAACATTTCCCGTATTTTGCAAATGCACCTACTGGGTGGAAGAACTCAGTGAGAC
ACAACTTGTCATTGAATAAGTGTTTCAAGAAAGTGGACAAAGAGAGGAGTCAGAGTATTGGGAAAGGGTC
ATTGTGGTGCATCGACCCAGAGTATAGACAAAATCTAATTCAGGCTCTGAAAAAGACACCTTACCACCCA
CCTCCTACTCCTCAGGCTTATCAAAGCACATCAGGTCCACCCATCTGGCCGGGCAGTACCTTCTTCAAGA
GAAACGGAGCCCTCCTGCAAGTTTCTCCAGGAGTGATACAAAATGGAGCGAGGGTTCTGAGTCGAGGGCT
GTTTCCTGGTGTCCGGCCGTTACCAATCACTCCCATTGGGATGACGGCAGCCATAAGGAATAGCATCACC
AGTTGCAGGATGCGGACTGAGAGCGAGCCCCCATGTGGCTCCCCAGTGGTCAGTGGCGATCCGAAGGAGG
ACCACAACTACAGTAGTGCCAAGTCCTCCACTGCCCGGAGCACCTCTCCCACCAGCGACTCCATCTCCTC
TTCCTCCTCCTCAGCCGACGACCACTATGAGTTTGCTACGAAGGGGAGCCAGGAGGGCAGTGAGGGAAGC
TTCCAGAGCCATGAGAGCCACAGTGAACCAGAGGAGGAGGACCGGAAACCCAGCCCGAAGGAAGGCAAGG
ATGCCCTGGGGGACAGCGGATACGCATCCCAGCACAAGAAGCGCCAGCACTTCGCCAAGGCCAGGAAGGT
CCCCAGCGACACACTGCCCCTCAAAAAGAGACGCACGGAGAAGCCGCCCGAGAGCGATGACGAGGAGATG
AAGGAGGCGGCCGGTTCACTCCTGCACTTAGCAGGGATTCGGTCCTGTTTGAACAACATCACCAATCGGA
CGGCCAAGGGGCAGAAAGAACAAAAGGAAACCGCAAAAAATTGA

Translation (457 aa):
MGPVMPASKKAESSGISVSSGLSQRYRGSGFSKALQEDDDLDFPLPDIRLEEGAMEDEELTNLNWLHESK
NLLKSFGESVLRSVSPVQDLDDDTPPSPAHSDMPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDI
YNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPYHP
PPTPQAYQSTSGPPIWPGSTFFKRNGALLQVSPGVIQNGARVLSRGLFPGVRPLPITPIGMTAAIRNSIT
SCRMRTESEPPCGSPVVSGDPKEDHNYSSAKSSTARSTSPTSDSISSSSSSADDHYEFATKGSQEGSEGS
FQSHESHSEPEEEDRKPSPKEGKDALGDSGYASQHKKRQHFAKARKVPSDTLPLKKRRTEKPPESDDEEM
KEAAGSLLHLAGIRSCLNNITNRTAKGQKEQKETAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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