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Report for CCDS26118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26118.1 Public Mus musculus 12 Rin3 23 108 98 CCDS HistoryNCBI Gene:217835Re-query CCDS DB by CCDS ID:26118.1Re-query CCDS DB by GeneID:217835See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26118.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056950.13 ENSMUSP00000060771.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056950.13Link to Ensembl Protein Viewer:ENSMUSP00000060771.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056950Re-query CCDS DB by Protein ID:ENSMUSP00000060771
Original member Current member NCBI NM_177620.4 NP_808288.2 Accepted alive Link to Nucleotide Sequence:NM_177620.4Link to Protein Sequence:NP_808288.2Re-query CCDS DB by Nucleotide ID:NM_177620Re-query CCDS DB by Protein ID:NP_808288Link to BLAST:NP_808288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808288.2 980 P59729 980 100% 0 0

Chromosomal Locations for CCDS 26118.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102283286 102283326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102312975 102313182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102325795 102325912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102350882 102350954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102358705 102358796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102368364 102369848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102373570 102373878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102382553 102382684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102387554 102387717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102389824 102390144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGCGACGCGCCGAAGCGCCCTCGAGCGCCCACCCTGCCGGTCCTATTCCAGATGCTGGCAAAGGAGAGG
GAGAGGAAGATGAGGAGAAAGACGGCACGAGGCTTGGTCTGTCAACCACCCCGAGGAACTGCATCCCACG
CCGGGGCATCAGTGTCCTGGAGAAGCTGGTGAAGACCTGCCCTGTGTGGCTGCAGCTAGGTCTAGGCCAG
GCAGAGGCTGCCAAGATCCTGCAGCAGGAGATGGCTGGGATGTTCCTGGTGTGCCGGGACAACAACCTGA
AGCAATTGGTGCTGTGTGTCCACTTCCCTTCCCTGAAGGGCAGCTCAGCTGAGGTGCTGGAGTACCCCAT
CAAAGAAGAAAAGGCTATACTGTACCTGGAAGGCTCAGTTCTTGTGTTTGAGGACATCTTCAGACTGATT
GCGTTCTACTGTGTCAGTAGAGACTTACTGCCCTTCACTCTACGGCTGCCCCAGGCCATCCTCGAAGCTA
GCAGCTTCCTTGAACTTGAGACCATCTCCAACCTGGGCCTGGGTTTCTGGGACTCCTCGCTGAACTCAAG
AGGCTCTGCAGAGCCACTCAGAAGCCCAGCCCCTGGGACCCCTGCATCCTCCAGCCTCCGGCCTACAACC
CATTACGCAAATTGTTCCTGTGAAATCGAGCTCTCCGTGGGAAATGACCGCCTGTGGTTTGTGAATCCTA
TTTTCATCGAGGACTGCATCCTACCGGCTGATCCACCTCCACTGCCTACTGGCAGCTACCCTCCACGCCC
TACGCCTGCCACCCCGGATGCTACCTCACCCACCTCCAAGGGATCCCCACGTCGCCCCCCACCTCCACCC
CCGTTACCCACTGTTCCTCCTACTGGCCCTGCACGGCCTCTTGCGCCTCCTGTACCGCCTGCTGGCCCTT
TGCCCAACTCCCCCCTAACGCCCACCTCTCACCTTGCACCCCATGCACCGGGCCCCCCTGGCCACTCAAA
CCAACCACCCATGACAGCCTGCGAGAGTCTCCCTCGCCCAGCTGTAGGCCTGGGCCCCTTTGGAGAAGAA
GAGATGAAACCTGGGACAACTCCCAATCCCTTGCACCAAGCCCCTCCCCCTCCATTACCCCTGAAGAAGG
CTCTTCCAGCAGCCCCTCCCAGGAGGCGCATTTCTGAGAGGGTATCTCTGGAAAGCCAGAATGTGGGGAC
TTCAACAGACAGGGACCACTCAGGCATTTCTAGGACAGCATCACTCAACCTTCCTCCCCAGAGCACCGTA
AGTAGCCTTGGGGACAGGCCTCCAAGGACCACGGAGCAAAGCCAGGACACAGAGGCCAAAGCCAGCCATG
CTGACAGCATACCAGTGCCTCCTGGGAAGGCCAAACAACCCCCAGTACCACCCCCAAGGAAGAAGCGGGT
CTCCCGGCAGCTGGCCTCAACCCTTCTCAGTCCCTTGGAGAGCCCCATACAGGAGGCATCCTCTGAGAAA
CAGGCGACTGGTGCATCTTGGGAAGGCTTGAGTCCTGTCCGGCAAGCTGGCATGCAGCACCTCCAAGTTC
AGTCCAGCAGCTGTCCCCAAAGCTCTCCAGAGTTCAAGGGTTCCCAGGCCTCACTCTCAGACAGCCTGGG
GGTGCCTGCCTCGGCCGCTGACCAGGACTCCTACTCAACCAGCAGTGCAGAGGAGGAGCTGGAGTTCAGC
AGCCCCAACGTGAAGAAGAAACCCTCAATGATCCTGGACAAGGCCCGCCACCGCCTCAGCTTCGTCAGCT
TCGCCAGCGTCTTCCATGCCTTCCTCTCCAGCGACCGCAAACTGTATAAGAAGGTGGTGGAGCTGGCACA
GGACAAGAGCTCCTACTTCGGCAGCCTGGTGCAGGACTACAAGGTGTACAGCCTGGAGATGATGGCCCGC
CAGACATCCAGCACTGAGATGCTGCAGGAGATCCGTACCATGATGACCCAGCTCAAGAGCTACCTGCTAC
AGAGCACTGAACTCAAAGCCTTGGTGGAACCCACCCTGCACTCGGAGGAGGAACTCGAGGCCATAGTGGA
GTCAGCCTTGTACAAGTGTGTCTTGAAGCCCCTGAAGGAGGCCATCAACTCCAGCCTGCTGGAGATCCAC
AGCCGGGATGGCTCACTGCAGCAGCTCAAGGAGAACCAGCTAGTGGTCCTGGCCACCACCACCACCGACC
TGGGTGTGACCACCAGCGTGCCTGAGGTGGCTGTCATGGAGAAGATCCTGCAGAAGCTGACCAGCATGCA
CAAAGCCTACTCACCAGGGAAGAAAATCTCCATCTTGCTGAAGACCTGCAAGCTCATCTATGACTCCATG
GCTCTTGGCAACCCAGGGAAGCCCTACGGGGCCGACGACTTCCTGCCTGTGCTCATGTACGTGCTGGCCC
GCAGCAACCTCACTGAGATGCTCCTCAACGTGGAGTACATGATGGAGCTCATGGACCCCGCCCTGCAGTT
AGGAGAGGGTTCCTACTATCTGACCACCACCTACGGAGCCCTGGAGCACATTAAAAACTATGACAAGATC
ACAGTGACCCGACAGCTGAGCGTGGAGGTGCAGGACTCCATCCATCGCTGGGAACGCAGGCGCACGCTCA
ACAAAGCGCGGGCCTCCCGCTCCTCTGTGCAGGACTTCATCTGTGTGTCCTACCTGAAGCCCGAGCAGCA
GTCACGGACACTGGCGTCACGGGCAGACACAGCAGCCCAGGCACTGTGTGCACAGTGCGCTGAGAAGTTT
GAGGTGTCACAGCCCCAAGACTACCGGCTCTTCGTGCTGGTGGACGGGCGCTGCTTCCAGCTGGCCGACG
AGGCTCTGCCGCATCGCATCAAGGGTTATCTGCTTCGGAGCGAGCCCAAACGAGACTTCCACTTCGTGTA
CCGGCCCCAGGACAGCGGCAAGGATGCTTCAAGCCAGCCCTGTATAGTAGTGCGGGAACCCAACTTCCTA
TAA

Translation (980 aa):
MRRAEAPSSAHPAGPIPDAGKGEGEEDEEKDGTRLGLSTTPRNCIPRRGISVLEKLVKTCPVWLQLGLGQ
AEAAKILQQEMAGMFLVCRDNNLKQLVLCVHFPSLKGSSAEVLEYPIKEEKAILYLEGSVLVFEDIFRLI
AFYCVSRDLLPFTLRLPQAILEASSFLELETISNLGLGFWDSSLNSRGSAEPLRSPAPGTPASSSLRPTT
HYANCSCEIELSVGNDRLWFVNPIFIEDCILPADPPPLPTGSYPPRPTPATPDATSPTSKGSPRRPPPPP
PLPTVPPTGPARPLAPPVPPAGPLPNSPLTPTSHLAPHAPGPPGHSNQPPMTACESLPRPAVGLGPFGEE
EMKPGTTPNPLHQAPPPPLPLKKALPAAPPRRRISERVSLESQNVGTSTDRDHSGISRTASLNLPPQSTV
SSLGDRPPRTTEQSQDTEAKASHADSIPVPPGKAKQPPVPPPRKKRVSRQLASTLLSPLESPIQEASSEK
QATGASWEGLSPVRQAGMQHLQVQSSSCPQSSPEFKGSQASLSDSLGVPASAADQDSYSTSSAEEELEFS
SPNVKKKPSMILDKARHRLSFVSFASVFHAFLSSDRKLYKKVVELAQDKSSYFGSLVQDYKVYSLEMMAR
QTSSTEMLQEIRTMMTQLKSYLLQSTELKALVEPTLHSEEELEAIVESALYKCVLKPLKEAINSSLLEIH
SRDGSLQQLKENQLVVLATTTTDLGVTTSVPEVAVMEKILQKLTSMHKAYSPGKKISILLKTCKLIYDSM
ALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKNYDKI
TVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYLKPEQQSRTLASRADTAAQALCAQCAEKF
EVSQPQDYRLFVLVDGRCFQLADEALPHRIKGYLLRSEPKRDFHFVYRPQDSGKDASSQPCIVVREPNFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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