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Report for CCDS26125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26125.1 Public Mus musculus 12 Btbd7 23 108 98 CCDS HistoryNCBI Gene:238386Re-query CCDS DB by CCDS ID:26125.1Re-query CCDS DB by GeneID:238386See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045652.7 ENSMUSP00000046951.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045652.7Link to Ensembl Protein Viewer:ENSMUSP00000046951.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045652Re-query CCDS DB by Protein ID:ENSMUSP00000046951
Original member Current member EBI ENSMUST00000223554.1 ENSMUSP00000152426.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223554.1Link to Ensembl Protein Viewer:ENSMUSP00000152426.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223554Re-query CCDS DB by Protein ID:ENSMUSP00000152426
Original member NCBI NM_172806.2 NP_766394.2 Updated not alive Link to Nucleotide Sequence:NM_172806.2Link to Protein Sequence:NP_766394.2Re-query CCDS DB by Nucleotide ID:NM_172806Re-query CCDS DB by Protein ID:NP_766394
Current member NCBI NM_172806.3 NP_766394.2 Accepted alive Link to Nucleotide Sequence:NM_172806.3Link to Protein Sequence:NP_766394.2Re-query CCDS DB by Nucleotide ID:NM_172806Re-query CCDS DB by Protein ID:NP_766394Link to BLAST:NP_766394.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766394.2 1130 Q8CFE5-1 1130 100% 0 0

Chromosomal Locations for CCDS 26125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102785111 102785932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102787935 102788384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102790705 102790883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102793746 102793935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102795173 102795316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102807900 102808060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102811120 102811195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102812635 102812843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102837618 102838697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102840100 102840181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGGTGCTAATGCATCTAACTATCCTCATTCATGTTCCCCAAGGGTAGGGGGAAATTCACAGGCCCAGC
AGACTTTCATAGGAACATCTTCCTATTCTCAACAAGGCTATGGTTGTGAGTCAAAGTTGTATAGCCTTGA
CCATGGCCATGAGAAACCACAAGACAAAAAAAAGAGAACCTCTGGCCTTGCCACTCTCAAAAAGAAGTTT
ATTAAACGCCGAAAATCTAATAGATCGGCTGATCACGCCAAGCAGATGCGAGAACTCCTCTCTGGGTGGG
ATGTTAGAGATGTCAATGCACTAGTGGAAGAATATGAGGGAACTTCAGCCTTGAAGGAGCTTTCTCTGCA
AGCCAGTTTGGCTAGGCCAGAAGCTCGGACCCTGCAGAAGGACATGGCCGACCTTTATGAGGATAAGTAC
TGTACTGACGTGGACTTAATATTTCAGGAAACTTGTTTTCCTGTTCACCGTGCCATTTTGGCAGCAAGGT
GTCCATTTTTTAAAACCCTGCTTTCTTCTTCACCTGAGTATGGGGCAGAGATAATAATGGACATCAGTAC
AGCTGGTATTGATATGCCCATGTTTTCCGCCTTGTTACACTACCTTTATACAGGAGAGTTTGGAATGGAG
GACTCAAGATTTCAGAATGTCGACATCCTTGTTCAGCTTAGTGAAGAATTTGGAACACCAAATCCCCTTG
ATGTAGATATGCGTGGACTCTTTGATTACATGTGTTATTATGATGTTGTCCTTAGTTTTTCTTCAGATTC
TGAACTAGTTGAAGCTTTTGGTGGAAATCAGAACTGTTTAGATGAAGAGCTCAAAGCCCACAAGGCTATT
ATTTCTGCACGGTCCCCGTTTTTCCGAAATTTATTACAAAGGAGAATACGGACTGGTGAAGAAATCACAG
ACCGAACTTTGAGAACTCCCACAAGAATTATATTAGATGAGTCCATTATACCAAAAAAATATGCAAAAGT
GATATTACACTGTATGTATACCGATGTGGTGGACCTCTCTGTTTTACACTGTAGCCCCTCTGTGGGGAGT
CTCAGTGAAGTTCAGGCTCTCGTCGCAGGGAAGCCAAACATGACCAGGGCAGAAGAAGCCATGGAACTTT
ACCACATAGCACTATTCTTGGAATTTAACATGCTTGCACAAGGCTGTGAGGACATCATTGCTGAGAGCAT
CTCATTAGACACCTTAATTGCCGTCCTCAAGTGGAGCTCGCATCCATACGGCTCTAAGTGGGTGCACCGA
CAAGCTGTGCATTTCCTGTGTGAGGAGCTATCCCAGGTCATGACTTCGGATGTTTTTTATGAACTGAGCA
AAGACCATCTGCTTACTGCTATCCAGTCTGACTACCTACAGGCAAGCGAACAAGATATCCTTAAATATCT
GATTAAATGGGGTGAGCATCAGTTGATGAAAAGAATAGCAGACAGAGAGCCAAACTTACTGAGTGGCACT
GCACATAGTGTGAACAAAAGAGGTGTGAAGAGAAGAGACCTGGACATAGAAGAACTTAGAGAGATCCTTT
CTTCTCTCTTGCCTTTTGTGCGGATTGAACACATCCTACCTATAAACAGTGAGGTCTTAAGTGATGCAAT
GAAAAGAGGCTTGATCAGCACGCCGCCATCAGACATGCTTCCTACAGCAGAGGGCGGGAAATCAAACGCC
TGGCTGCGGCAGAAGAACGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCCTATGTGGAGGAAGCAA
AGTCAGTGCTGGATGAGATGATGGTGGAACAGACAGACCTGGTGCGACTGCGAATGGTGCGCATGTCCAA
TGTCCCAGACACACTCTACATGGTCAGCAATGCCATGCCCCAGTGCTGCCACATGATCAGCCACCAGCAG
ATCAGCAGTAACCAGTCGAGCCCTCCATCAGTTGTAGCCAATGAGATCCCAGTTCCTCGTCTCCTCATTA
TGAAGGATATGGTGAGGCGCCTGCAGGAACTGCGGCACACAGAGCAGGTGCAGAGAGCCTATGCACTGAA
CTGTGGGGAAGGTGCCACCGTCAGCTATGAAATCCAGATCCGAGTGCTCAGAGAGTTTGGTCTTGCAGAC
GCCGCTGCAGAGCTCCTACAGAATCCTCACAAGTTCTTTCCTGATGAACGGTTTGGGGATGAAAGTCCGC
TCTTGACAATGAGGCAGCCTGGGAGATGTCGTGTCAACAGTACCCCTACTGCAGAAACCATGTTTACAGA
CCTGGACTCTTTTGTGGCCTTCCATCCACCTTTACCCCCTCCGCCCCCTCCGTACCACCCTCCAGCTACT
CCAATCCATAACCAGCTCAAGGCAGGCTGGAAGCAAAGGCCTCCCAGTCACCACCCTTCCCGTTCATTTT
CTTACCCCTGTAATCATTCACTGTTTCACTGCAGAACAGCTCCTAAACCTGGCCCTCCCCCAGTCTATTT
GCCAGGTGTTAAAGTAGCCCCTCCCGACTGCACCAACACCACAGGCCTGGGGAGACAGACGGTTGCTGCT
GCTGCTGCAGCTGCTGCCGCCTCAGCAGCAATAATACCTGAGAAGCAAGTGTGTCCACAGCCTGTGCTGA
ATGACCTGATGCCAGATATCGCCATGGGGGTGTCTACACTGTCACTCAAGGACAGGAGGCTCCCAGAGCT
CGCTGCAGACACAGAGTTATGCCAGACAGTTTCTGAAGCAGGAACGGGACCTCCCCAGCATCTGTCATGT
ATTCCACAGAGACACACAAACACATCTCGAAAAAAACCCACACTAGAGCAGAAAGCAGACGGTAGAGAAA
ATCAGCAGGAATACCCAGATCTCTATGACTTCTCAAATGCTGCTTGCAGACCTTCCACTCCTGCTCCTGG
CAGACACTCCCCTTCCCCTGCTCATGGTAGATACTTTGGTCCAGACTTGTACAGCCACAATAAGGCATCA
CCAAATGGCTTAAAGTCAGTTTACCTACCTGGTCAGACCTCTCCTAAAAAGCAGGAAGACCCTAGGAGAG
AGTACCCACCGTCTCCTGACGGCCATCCGCACAGGCAGAAGAGGGAGCCGATACGTCTGGACGTGGTTGA
GCAGCCTCCCCAGAGGCCAGACTTTCCTTCCGCAGCCTCAGAAAATGCTAGTCATGGTCCAGCCCATGTC
AGGGCACGGACTGCAGTAGAAACTGACTTGACTTTTGGGCTGACATCTAACAGACCTCCTTCCCATTCTG
CGTGTAGCTCTGAAGTTCTCGAAGAGCGATCCAGTAGACGACTGACAGACAGCGAGCCCCTGGGCCATGG
AGCTCATCAAAGAAATGCAGATCTGGAAAGGGGTGATTCCATTAGCAGAGGACGGAGGTCGCCAAGCAAG
CCAGACTTCCTCTACAAAAAGTCTGCCCTCTGA

Translation (1130 aa):
MGANASNYPHSCSPRVGGNSQAQQTFIGTSSYSQQGYGCESKLYSLDHGHEKPQDKKKRTSGLATLKKKF
IKRRKSNRSADHAKQMRELLSGWDVRDVNALVEEYEGTSALKELSLQASLARPEARTLQKDMADLYEDKY
CTDVDLIFQETCFPVHRAILAARCPFFKTLLSSSPEYGAEIIMDISTAGIDMPMFSALLHYLYTGEFGME
DSRFQNVDILVQLSEEFGTPNPLDVDMRGLFDYMCYYDVVLSFSSDSELVEAFGGNQNCLDEELKAHKAI
ISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESIIPKKYAKVILHCMYTDVVDLSVLHCSPSVGS
LSEVQALVAGKPNMTRAEEAMELYHIALFLEFNMLAQGCEDIIAESISLDTLIAVLKWSSHPYGSKWVHR
QAVHFLCEELSQVMTSDVFYELSKDHLLTAIQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGT
AHSVNKRGVKRRDLDIEELREILSSLLPFVRIEHILPINSEVLSDAMKRGLISTPPSDMLPTAEGGKSNA
WLRQKNAGIYVRPRLFSPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVSNAMPQCCHMISHQQ
ISSNQSSPPSVVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYEIQIRVLREFGLAD
AAAELLQNPHKFFPDERFGDESPLLTMRQPGRCRVNSTPTAETMFTDLDSFVAFHPPLPPPPPPYHPPAT
PIHNQLKAGWKQRPPSHHPSRSFSYPCNHSLFHCRTAPKPGPPPVYLPGVKVAPPDCTNTTGLGRQTVAA
AAAAAAASAAIIPEKQVCPQPVLNDLMPDIAMGVSTLSLKDRRLPELAADTELCQTVSEAGTGPPQHLSC
IPQRHTNTSRKKPTLEQKADGRENQQEYPDLYDFSNAACRPSTPAPGRHSPSPAHGRYFGPDLYSHNKAS
PNGLKSVYLPGQTSPKKQEDPRREYPPSPDGHPHRQKREPIRLDVVEQPPQRPDFPSAASENASHGPAHV
RARTAVETDLTFGLTSNRPPSHSACSSEVLEERSSRRLTDSEPLGHGAHQRNADLERGDSISRGRRSPSK
PDFLYKKSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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