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Report for CCDS26142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26142.1 Public Mus musculus 12 Serpina1e 23 108 98 CCDS HistoryNCBI Gene:20704Re-query CCDS DB by CCDS ID:26142.1Re-query CCDS DB by GeneID:20704See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085054.4 ENSMUSP00000082130.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085054.4Link to Ensembl Protein Viewer:ENSMUSP00000082130.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085054Re-query CCDS DB by Protein ID:ENSMUSP00000082130
Original member Current member EBI ENSMUST00000122229.7 ENSMUSP00000113606.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122229.7Link to Ensembl Protein Viewer:ENSMUSP00000113606.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122229Re-query CCDS DB by Protein ID:ENSMUSP00000113606
Original member Current member NCBI NM_009247.2 NP_033273.1 Accepted alive Link to Nucleotide Sequence:NM_009247.2Link to Protein Sequence:NP_033273.1Re-query CCDS DB by Nucleotide ID:NM_009247Re-query CCDS DB by Protein ID:NP_033273Link to BLAST:NP_033273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033273.1 413 Q00898 413 100% 0 0

Chromosomal Locations for CCDS 26142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103947018 103947209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103948014 103948164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103949047 103949317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103950781 103951408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGACTCCCTCCATCTCATGGTGTCTACTGCTTCTGGCAGGCCTGTGTTGCCTGGTCCCCAGCTTTCTGG
CTGAGGATGTTCAGGAGACAGACACCTCCCAGAAGGATCAGTCCCCAGCCTCCCATGAGATTGCTACAAA
CCTGGGAGACTTTGCCATCAGTCTATACCGGGAGCTGGTCCATCAGTCCAACACTTCCAACATCTTCTTC
TCCCCAGTGAGCATTGCCACAGCCTTTGCTATGCTCTCCCTAGGGAGCAAGGGTGACACTCACACGCAGA
TCCTAGAGGGCCTGCAGTTCAACCTCACACAAACATCGGAGGCTGACATCCACAATTCCTTCCAACACCT
CCTCCAAACCCTCAACAGACCAGACAGTGAGCTGCAGCTGAGCACAGGCAATGGCCTCTTTGTCAACAAT
GACCTGAAGCTGGTGGAGAAGTTTCTGGAAGAGGCCAAGAACCATTATCAGGCAGAAGTCTTCTCTGTCA
ACTTTGCAGAGTCAGAGGAGGCCAAGAAAGTGATTAATGATTTTGTGGAGAAGGGAACCCAAGGAAAGAT
AGTTGAGGCTGTGAAAAAACTAGAACAAGACACAGTTTTCGTCCTGGCAAATTACATTCTCTTTAAAGGC
AAATGGAAGAAGCCATTCGATCCTGAGAACACTAAGCAAGCTGAGTTCCACGTGGACGAGTCCACCACGG
TGAAGGTGCCCATGATGACCCTCTCGGGCATGCTTGACGTGCACCATTGCAGCACGCTCTCCAGCTGGGT
GCTGCTGATGGATTACGCGGGCAACGCCACTGCTGTCTTCCTCCTGCCCGATGATGGGAAGATGCAGCAT
CTGGAGCAAACTCTCAACAAGGAGCTCATCTCTAAGTTCCTGCTAAACAGGCGCAGAAGGTTAGCCCAGA
TCCATATCCCCAGACTGTCCATCTCTGGAAACTATAACTTGGAGACACTCATGAGTCCACTGGGCATCAC
CCGGATCTTCAACAGTGGGGCTGACCTCTCCGGAATCACAGAGGAGAATGCTCCCCTGAAGCTCAGCCAG
GCTGTGCATAAGGCCGTGCTGACCATCGATGAGACAGGAACAGAAGCTGCAGCAGCTACAGTCTTACAAG
GCGGTTTTTTGTCTATGCCCCCTATCTTGCACTTCAACCGCCCTTTCCTTTTCATAATATTTGAAGAACA
CTCTCAGAGCCCCCTCTTTGTGGGAAAAGTGGTAGATCCCACACATAAATGA

Translation (413 aa):
MTPSISWCLLLLAGLCCLVPSFLAEDVQETDTSQKDQSPASHEIATNLGDFAISLYRELVHQSNTSNIFF
SPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHNSFQHLLQTLNRPDSELQLSTGNGLFVNN
DLKLVEKFLEEAKNHYQAEVFSVNFAESEEAKKVINDFVEKGTQGKIVEAVKKLEQDTVFVLANYILFKG
KWKKPFDPENTKQAEFHVDESTTVKVPMMTLSGMLDVHHCSTLSSWVLLMDYAGNATAVFLLPDDGKMQH
LEQTLNKELISKFLLNRRRRLAQIHIPRLSISGNYNLETLMSPLGITRIFNSGADLSGITEENAPLKLSQ
AVHKAVLTIDETGTEAAAATVLQGGFLSMPPILHFNRPFLFIIFEEHSQSPLFVGKVVDPTHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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