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Report for CCDS26170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26170.1 Public Mus musculus 12 Rtl1 23 108 98 CCDS HistoryNCBI Gene:353326Re-query CCDS DB by CCDS ID:26170.1Re-query CCDS DB by GeneID:353326See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149046.3 ENSMUSP00000115957.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149046.3Link to Ensembl Protein Viewer:ENSMUSP00000115957.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000149046Re-query CCDS DB by Protein ID:ENSMUSP00000115957
Original member Current member NCBI NM_184109.2 NP_908998.1 Accepted alive Link to Nucleotide Sequence:NM_184109.2Link to Protein Sequence:NP_908998.1Re-query CCDS DB by Nucleotide ID:NM_184109Re-query CCDS DB by Protein ID:NP_908998Link to BLAST:NP_908998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_908998.1 1744 Q7M732 1744 100% 0 0

Chromosomal Locations for CCDS 26170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109590169 109595403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5235 nt):
ATGATAGAACCCTCTGAAGACTCATTTGAGACGATGATGGAGCTTAAGAATCCATCATCAAAACAAATGG
AGTCCTCCGAGGGCTCATCCAACACCGTTGAAGAGACACCAGGCAGCAGTGGAGCCCAGGCGGGGGCCCA
GGCAGGGGCCCAGGCGGAGGCCCAGGCGGAGACCCAGGTGGAGGCCCAGGCGGAGGCTCAGGCTGAAGCC
CAGGTTGAGGCCCAGGTTGAGGCCCAGGCGGGCTCAGATAGTGGCCCAGCCCAGGAAGAAAAGGAGCCAC
CCAGTGGCCCCCTCAAGGAAATGCAAGAGCTGCCCACTAATCTACTCCAAGAAGTGGAGGAGCCATCCAG
TGGCCCCCACCAGGAAATGCAAGAGCTGCCCACTGATCTACTCCAAGAAGTGGAGGAGCCATCCAGTGGC
CCCCACCAGGAAATGCAAGAGCTACCCACTGATCTACTCCGGGAAGTGGAGGAGCCATCCAGTGGCCCCT
ACCAGGAAATGCAAGAGCTACCCACTGATCTACTCCGGGAAGTGGAGGAGCCATCCAGTGGCCCCTACCA
GGAAATGCAAGAGCTACCCACTGATCTACTCCGGGAAGTGGAGGAGCCATCCAGTGGCCCCTACCAGGAA
ATGCAAGAGCTACCCACTGATCTACTCCGGGAAGTGGAGGAGCCATCCAGTGGCCCCTACCAGGAAATGC
AAGAGCTACCCACTGATCTACTCCGGGAAGTGGAGGAGCCATCCAGCGACCCCTGTGAGGCATCATCTAA
CGATCTACCCCAAGACATGGAGGAATCAAGTGATGATGGTTCGAACCAGGAGTCGAGTGATGGTTCAAAC
CACGAATTAAGTAATGGTTCAAACCATGAGTCGAGCTTTGGTTCAAACCCAGAGTCGAGCGATGTTTCCA
ACCTGGAGTCAAGCGGTGGTTCAAACCAGGAGTCCAGCGATGGTTCACAAAAGGAGTCAAGCTATGATTC
AAACCCGGAGTTAAGTGATAATTCAAACCAGGAGTTAAGCGATAATTCGAACCAGGAGTCAAGCGACAGT
TCAAACCAGTCAAGTGATATTTCAAACCAGGAAGGGTCGGAACCACTCAGTGAGGCATCCGATTATAGCA
TGGATGAAACAATCAACTCATCCGAGACCCAGTCAGACCAAGATGATACTGACCTGGGAGATGACGAGGA
AGAGGAGGAAGAGGAAGGTGGTGAAGAGGAAGGTCAGCCCAAGAACTCTCCAGAAGAAGTCGTGGCCACC
ATGGGGAACGTCATCTCGCTGTTCCTCCGGATGCAAGACCTAAAAGAACAACAGAGAGTGGCAGAAAGGC
TCATGATGCAGGCTATCAACGAAGGTCGCCTGCCCTCCCTCAGGCCCTTCTCTGGAGATCGCAGAGACTA
CCATGAGTTTGTCGTGCTCTGCCAGATGACAATGCAGAACTACCCAAGTATGCTATACAATGATGAGCTG
CGGGTGAAATTCGTCATCCGCCACCTGACTGACCTAGCCTTGGAATGGGCCAACGACCTCGTAGAGCAGA
ACAGCCCAGTGATAAACAACTTCTCAGCCTTCCTGGAGGCCATGTCAGAAAAGTTTGAGTATCGGCAGAC
CCTGCGTGTGGCGGAAGACGCCATGTTCAACATCAGGCAGGGGAACCGCTGTGCGGCCGATTACATCAAT
GAGTTCCGGGGTCTGATACCCACCTTAGGCTGGCCAGATGAAGTCCTGCAGGCCCACCTGTGCCAGGGGC
TCAACGAAGAGATCAGGCACTATCTGTTCCGGATCCCTCAGCCGAATTCCCTAGACAACCTGATTGTACT
TGTCCTGCAACTTGAAGAAAAGCTGGCAGAGAGAAGAGCATTACTCAGGCTGCCACCTGAGTCGCGCCCA
AGAAGCGTAGCCTGGATGGATGCTCCCGCCCCAGAGAAGTGGAGGGTAAGCAGCTGGCTGCCCAATGAGT
TCCACCCAGACATTGATCGCGATCACCTCTTCTTACTGCTCTTGGTGAGAGTGGACCCCTACCACAGTGT
CGCAGTGCGGGCCCTGGTGGACTCAGGAGCAGAAGGGAACTACATGGATGAGAGGTTTGCCCAGGAACAC
TATGTGGAACTCTATGAGAAGCCTTATCCACAGATAATCCAAGGTGTGGATGGCATCCCAATTGGCAATG
AACCCGTCTGGCTGTGCACCGAGCCCCTGGTATGTGTCCACCAGAAGCATTATGAGTACATCGAATTTGA
CATCTTACCTTCGCCCAACTTCTCCATCGTCTTAGGCATGAAGTGGCTCCGAACCCATGCCCCTGAAGTC
GACTGGATGAGAGGCCGGTGTACCTTCCACTCTCCCTACTGTCTGCGGAATTGCTTCACCCCACCTCCAC
CATGCATCGCACTAGAGACATACAGCATAAGCCTACTGCCCGGATTGCCACACACATACTCAGACCTGGC
CGACGTGTTTAACCCGAGGGAGGCAGATGATGAGACTTCCGACCAGCCAAGCTCAGACGGATCCGATGAT
CTTTCTGAATCAGAGCCCTCTGAGCTTCAGCAGGCTGGAGACAGTGATCAAAGCGGCGTCTTTTACGAGT
CTGGGGCCCGAGAGACTTTGGAACCTGTGAGCGCCAGGATGCAAGAGAAAGCCAGGCAGCAAGAGAAAGC
CAGGGAGCAAGAGGAATACTGGATACTGTATGACATGCTGACTGACAGACAAGACTACACGCAGATGGTA
CCAGAGCTATTCGACCAGCTACATGGAGCGGCATGGTTCACAAAACTGGAGCTGCTTGGGATTAAGGAAA
GTGAGATGAGGCACACGGTCACACACACGGAAGACACTTGGAGAGCATCGTTCGGTTTCGGCCTTCACCA
GATGAGATGCTACCGGCCCTTCACAATGAACTCATACTCTGACGAAGGGAACAACATTGTTCACTTCATC
CTAAAAGACATCCTAGGGTTGTTTGTGATTTGCCATGGCAGAGAGGTCCTGGTCTACTCAATGAGCCAGG
AGGAACACTCCCAGCATGTCCGCCAAGTCCTGGTCCGCTTTCGGTATCACAACATCTACTGTTCACTGGA
CAAAACTCAGTTCCATCGCCAGACCGCTGAAATCTTGGGCTTCAACATATCCCCCAAAGGGGTGAAACTG
AACAAGAACCTTATGAACCTCATCGTGGGGTGCCCTGTCCCTGGCAGCAGGAGGTGTCTTCAAAGTGTGA
TTGACCTTGTCTATCCCTATCGCCACTTCGTGGAGAACTTCGCTGTCATCGCAGCACCCCTAGTGAGACA
ACTGCTGAGTTCAGAGCCCTACTACTGGGGAGAAGAGGAGCAGGAGGCCTTGGAATCCCTGAAGAGGGCT
TTCCGCAAGTCGCCCGTTCTCTATCACCCTAAGCCTCAGAACCCATTCTACTTGGAAACAGACATCACTG
GGTCATTCCTGTCTGCCTCCCTGGTCCAAACCGACGACGAAACTGGCAAGAAATCTACCTGTGCTTTCTA
TTCAAGACCCCTCTCTACAATGGAGGTGGAGTACCCTCGAGTGGAGATGAGGATCCTTCCAATCCGGGCT
GCCTTCATGGTGTGGTGCCGCTACCTGGAGAACACCGAGGAGCCCATCATGATCCTTCTCAACACAGAGG
ATCTAGCCTCTCTGAATAATGACAGGCTCACCGTACTTCTCCCCGGGCATTGGGTCTTCTTCTTCTCACA
CTTCAATTTTGGTGTTATGGAGATGCCAGCTGAAGGTGACACACAAGCACTCTTCCGCAGATGTTGGAAC
CAGAGAGGCTTCAGAGCAAGGTTTCTGCGCCCACTGCTGCTTATGTCCATTAGGGCAAATCTAAGGTACT
TTGACAGATCCTCTGAGACTGAGGATAAAGAGGATGATGAAGAAGAGGAGGAGGAAGATGGTGAAGAAGA
AGAAGGGGAGGAGGAGGAAGATGGTGAAGAAGAAGAAGGGGAGGAGGAGGAAGATGGTGAAGAAGAAGAG
GAGGAGGAGGAAGATGATGAAGAAGAAGAAGGGGAGGAGGAGGAAGATGGTGAAGAAGAAGAAGGGGAGG
AGGAGGAAGATGGTGAAGAAGAAGAAGGGGAGGAGGAGGAAGATGGTGAAGAAGAAGAAGGGGAGGAGGA
GGGAGAGGAGGAGGAAGAAGGAGAGGAGGAAGAGGAGGAAGAAGAGGATGAGGAGGAAGAGGAGGAGGAA
GAGGAAGAGGAGGAAGAAGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAGGAAG
ATGAGGAAGAAGAGGATGAGGAGGAAGAAGATGAGGAGGTGCCCAGCATGGTGCGGGAGCTACTGGCTGC
CATCCCGATGGACCATATCCTCAATGGCTTACTGGCTCACTTCAGTGTGGCCCAGATCCGGGCCGTTGTC
CTAAACTTCTTCCGTGGCCTGCTCTACTGGAAGAGTCTCCTGGGTGTGGCAGCTGTCCTGGTGATGTTGA
GAGCAAGGCAGCCCCTCTCCCCAGTGCCTGCCCCTAATTTGGAAGTGGCCAGGCCTCAGCACCGGCACAC
ACTCCGACTCATCCTGGACTCGACCCTCATTGCGAGTAGTGGCATGGCCACAGCCATCGCTCAGTTGCTC
AGCCAGATGCCCCCTCTAGTGGGTGCCAACACCCTCCCAGCTCGAGAGCTGGCTGAGCTTTTCCTGGGCC
CAAGGTGCTGGCATCGGAATGCTCTGCATTCCCAGCCTCCACGGGGGATGCGCTTCACCCCTGGGTTCTG
GTTGACCCTGTGTGAGTTCTTTGGGGTCAGAGTCAACCCTGAGGATGACGTCTTTCCTGACCCTTACCAG
CACCGGTACTTGGAACTGCACGTCGTTGGGGATGAAGATGTCGTCTTGCGAGAAGCCCTGCAAGACGACC
TGCAACGTTACCGTCAGTGTGGCCTGCATGACGGCCTGCAAGACACCTCGCAGGACGCGCAGGACAACGA
CGTGCAAGAGGACCTGTTTGGCGACCAGGAAGCGGTCACCTTCAGACCACGAAATCTTTTGGACCCAGAG
GTCCTAGATTTCCTCAACAACCGGCTACTCTACACCCTGGGCACCGATGGCCGCCTTACTCTGCTTAGCA
GAGATCAGGTGGCCCAGGCCCTCACACGATTCCTGGCCATGGCCTCCAGAATGGCGCTGCCTTCCCCAGC
CAGGGAACAGGCAAGGCTAGAAGAGCTATCAGACTCAGATGATGAACTTGACTGA

Translation (1744 aa):
MIEPSEDSFETMMELKNPSSKQMESSEGSSNTVEETPGSSGAQAGAQAGAQAEAQAETQVEAQAEAQAEA
QVEAQVEAQAGSDSGPAQEEKEPPSGPLKEMQELPTNLLQEVEEPSSGPHQEMQELPTDLLQEVEEPSSG
PHQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSGPYQE
MQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSDPCEASSNDLPQDMEESSDDGSNQESSDGSN
HELSNGSNHESSFGSNPESSDVSNLESSGGSNQESSDGSQKESSYDSNPELSDNSNQELSDNSNQESSDS
SNQSSDISNQEGSEPLSEASDYSMDETINSSETQSDQDDTDLGDDEEEEEEEGGEEEGQPKNSPEEVVAT
MGNVISLFLRMQDLKEQQRVAERLMMQAINEGRLPSLRPFSGDRRDYHEFVVLCQMTMQNYPSMLYNDEL
RVKFVIRHLTDLALEWANDLVEQNSPVINNFSAFLEAMSEKFEYRQTLRVAEDAMFNIRQGNRCAADYIN
EFRGLIPTLGWPDEVLQAHLCQGLNEEIRHYLFRIPQPNSLDNLIVLVLQLEEKLAERRALLRLPPESRP
RSVAWMDAPAPEKWRVSSWLPNEFHPDIDRDHLFLLLLVRVDPYHSVAVRALVDSGAEGNYMDERFAQEH
YVELYEKPYPQIIQGVDGIPIGNEPVWLCTEPLVCVHQKHYEYIEFDILPSPNFSIVLGMKWLRTHAPEV
DWMRGRCTFHSPYCLRNCFTPPPPCIALETYSISLLPGLPHTYSDLADVFNPREADDETSDQPSSDGSDD
LSESEPSELQQAGDSDQSGVFYESGARETLEPVSARMQEKARQQEKAREQEEYWILYDMLTDRQDYTQMV
PELFDQLHGAAWFTKLELLGIKESEMRHTVTHTEDTWRASFGFGLHQMRCYRPFTMNSYSDEGNNIVHFI
LKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKL
NKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLLSSEPYYWGEEEQEALESLKRA
FRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPIRA
AFMVWCRYLENTEEPIMILLNTEDLASLNNDRLTVLLPGHWVFFFSHFNFGVMEMPAEGDTQALFRRCWN
QRGFRARFLRPLLLMSIRANLRYFDRSSETEDKEDDEEEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEE
EEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEEEEEGEEEEEEEEDEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEDEEEEDEEEEDEEVPSMVRELLAAIPMDHILNGLLAHFSVAQIRAVV
LNFFRGLLYWKSLLGVAAVLVMLRARQPLSPVPAPNLEVARPQHRHTLRLILDSTLIASSGMATAIAQLL
SQMPPLVGANTLPARELAELFLGPRCWHRNALHSQPPRGMRFTPGFWLTLCEFFGVRVNPEDDVFPDPYQ
HRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDAQDNDVQEDLFGDQEAVTFRPRNLLDPE
VLDFLNNRLLYTLGTDGRLTLLSRDQVAQALTRFLAMASRMALPSPAREQARLEELSDSDDELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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