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Report for CCDS26244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26244.1 Public Mus musculus 13 Nid1 23 108 98 CCDS HistoryNCBI Gene:18073Re-query CCDS DB by CCDS ID:26244.1Re-query CCDS DB by GeneID:18073See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005532.8 ENSMUSP00000005532.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005532.8Link to Ensembl Protein Viewer:ENSMUSP00000005532.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005532Re-query CCDS DB by Protein ID:ENSMUSP00000005532
Original member NCBI NM_010917.2 NP_035047.2 Updated not alive Link to Nucleotide Sequence:NM_010917.2Link to Protein Sequence:NP_035047.2Re-query CCDS DB by Nucleotide ID:NM_010917Re-query CCDS DB by Protein ID:NP_035047
Current member NCBI NM_010917.3 NP_035047.2 Accepted alive Link to Nucleotide Sequence:NM_010917.3Link to Protein Sequence:NP_035047.2Re-query CCDS DB by Nucleotide ID:NM_010917Re-query CCDS DB by Protein ID:NP_035047Link to BLAST:NP_035047.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035047.2 1245 P10493 1245 100% 0 0

Chromosomal Locations for CCDS 26244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 13437702 13437926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13463722 13464021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13465310 13465536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13468231 13468607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13472780 13472929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13476159 13476410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13478138 13478338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13482018 13482263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13483650 13483793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13486639 13486764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13489006 13489155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13490045 13490167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13499559 13499786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13500446 13500618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13502399 13502525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13506336 13506507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13507610 13507767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13508718 13508841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13509433 13509545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13509946 13510067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3738 nt):
ATGCTGGACGCGAGCGGCTGTAGTTGGGCGATGTGGACGTGGGCGCTGTTGCAGCTGCTGCTACTAGTGG
GGCCCGGAGGCTGCCTGAATCGCCAGGAGCTCTTCCCCTTCGGCCCTGGGCAGGGGGACCTAGAGCTGGA
GGCCGGGGACGACGTGGTATCCCCCTCCCTGGAACTGATCGGAGAACTGAGCTTCTATGATCGTACGGAC
ATCACGTCGGTCTATGTCACCACAAATGGTATCATCGCCATGAGCGAACCCCCAGCCACAGAATACCATC
CCGGAACCTTCCCACCCAGCTTCGGCTCAGTAGCGCCTTTCCTGGCTGACTTGGACACAACCGATGGCCT
GGGGAATGTGTATTATCGAGAAGACTTATCCCCGTTCATTATTCAGATGGCAGCAGAGTATGTCCAGAGA
GGCTTCCCGGAGGTCTCTTTCCAGCCCACTAGTGTGGTGGTTGTCACTTGGGAATCTGTGGCCCCTTATG
GAGGGCCCAGCAGCAGCCCTGCCGAGGAAGGCAAGAGAAACACGTTCCAGGCTGTTCTGGCCTCCTCAAA
TTCCAGCTCCTATGCCATTTTCCTTTATCCTGAAGATGGTCTACAGTTCTTTACAACATTCTCGAAGAAG
GATGAAAGCCAAGTACCTGCTGTGGTTGGTTTCAGCAAAGGTCTAGTAGGATTTCTATGGAAGAGCAACG
GAGCCTATAACATATTTGCCAATGACAGAGAATCAATTGAAAATTTGGCTAAGAGCAGCAACGCTGGGCA
CCAGGGTGTGTGGGTGTTTGAGATTGGAAGTCCTGCTACCGCCAAGGGCGTGGTGTCTGCAGATGTGAAC
CTGGACCTGGACGACGATGGAGCAGACTATGAAGATGAAGATTATGACCTAGTAACCTCTCACCTTGGCC
TGGAGGATGTAGCCACTCCCTCCCCCTCCCACAGTCCAAGAAGGGGATACCCTGACCCACACAATGTACC
TAGGATCCTCTCTCCTGGCTATGAGGCTACAGAGAGACCCCGTGGAGTCCCCACTGAGAGGACCAGATCT
TTCCAGCTGCCAGCGGAGAGGTTCCCTCAGCATCACCCCCAGGTCATTGATGTGGATGAAGTAGAGGAAA
CAGGAGTTGTATTCAGCTACAACACAGGTTCCCAGCAGACTTGTGCCAACAATAGACACCAGTGCTCCGT
GCATGCAGAGTGCAGAGACTATGCTACTGGCTTCTGCTGCAGGTGTGTGGCCAACTACACAGGCAATGGC
AGACAGTGCGTGGCAGAAGGCTCTCCACAACGGGTCAATGGCAAGGTGAAGGGAAGGATCTTCGTGGGGA
GCAGCCAGGTCCCCGTGGTGTTTGAGAACACTGACCTGCACTCCTATGTGGTGATGAACCACGGGCGCTC
TTACACAGCCATCAGCACCATCCCTGAAACCGTCGGCTACTCTCTGCTCCCCCTGGCACCCATTGGAGGC
ATCATCGGATGGATGTTTGCAGTGGAGCAGGATGGGTTCAAGAATGGGTTTAGCATCACTGGGGGCGAGT
TTACCCGGCAAGCTGAGGTGACCTTCCTGGGGCACCCAGGCAAGCTGGTCCTGAAGCAGCAGTTCAGCGG
TATTGATGAACATGGACACCTGACCATCAGCACGGAGCTGGAGGGCCGCGTGCCGCAGATCCCCTATGGA
GCCTCGGTGCACATTGAGCCCTACACCGAACTGTACCACTACTCCAGCTCAGTGATCACTTCCTCCTCCA
CCCGGGAGTACACGGTGATGGAGCCTGATCAGGACGGCGCTGCACCCTCACACACCCATATTTACCAGTG
GCGTCAGACCATCACCTTCCAGGAGTGTGCCCACGATGACGCCAGGCCAGCCCTGCCCAGCACCCAGCAG
CTCTCTGTGGACAGCGTGTTTGTCCTGTACAACAAGGAGGAGAGGATCTTGCGCTATGCCCTCAGCAACT
CCATCGGGCCTGTGAGGGATGGCTCCCCTGATGCCCTTCAGAATCCATGCTACATTGGCACCCATGGGTG
TGACAGCAATGCTGCCTGTCGCCCTGGCCCTGGAACACAGTTCACCTGCGAATGCTCCATCGGCTTCCGA
GGAGACGGGCAGACTTGCTATGATATTGATGAGTGTTCAGAGCAGCCTTCCCGCTGTGGGAACCATGCGG
TCTGCAACAACCTCCCAGGAACCTTCCGCTGCGAGTGTGTAGAGGGCTACCACTTCTCAGACAGGGGAAC
ATGTGTGGCTGCCGAGGACCAACGTCCCATCAACTACTGTGAAACTGGTCTCCACAACTGTGATATCCCC
CAGCGAGCCCAGTGCATCTATATGGGTGGTTCCTCCTACACCTGCTCCTGTCTGCCTGGCTTCTCTGGGG
ATGGCAGAGCCTGCCGAGACGTGGATGAATGCCAGCACAGCCGATGTCACCCCGATGCCTTCTGCTACAA
CACACCAGGCTCTTTCACATGTCAGTGCAAGCCTGGCTATCAGGGGGATGGCTTCCGATGCATGCCCGGA
GAGGTGAGCAAAACCCGGTGTCAACTGGAACGAGAGCACATCCTTGGAGCAGCCGGCGGGGCAGATGCAC
AGCGGCCCACCCTGCAGGGGATGTTTGTACCTCAGTGTGATGAATATGGACACTATGTACCCACCCAGTG
TCACCACAGCACTGGCTACTGCTGGTGTGTGGACCGAGATGGTCGGGAGCTGGAGGGTAGCCGTACCCCA
CCTGGGATGAGGCCCCCGTGTCTGAGTACAGTGGCTCCTCCTATTCACCAGGGACCAGTAGTACCTACAG
CTGTCATCCCCCTGCCTCCAGGGACACACTTACTCTTTGCTCAGACTGGAAAGATTGAACGCCTGCCCCT
GGAGAGAAACACCATGAAGAAGACAGAAGCCAAGGCCTTTCTCCATATCCCTGCAAAAGTCATCATTGGA
CTGGCCTTTGACTGCGTGGACAAGGTGGTTTACTGGACAGACATCAGCGAGCCTTCCATTGGGAGAGCCA
GCCTCCACGGTGGAGAGCCAACCACCATCATTCGACAAGATCTTGGAAGCCCTGAAGGCATTGCCCTTGA
CCATCTTGGTCGAACCATCTTCTGGACGGACTCTCAGTTGGATCGAATAGAAGTTGCAAAGATGGATGGC
ACCCAGCGCCGAGTGCTGTTTGACACGGGTTTGGTGAATCCCAGAGGCATTGTGACAGACCCCGTAAGAG
GGAACCTTTATTGGACAGATTGGAACAGAGACAATCCCAAAATTGAGACTTCTCACATGGATGGCACCAA
CCGGAGGATTCTCGCACAGGACAACCTGGGCTTGCCCAATGGTCTGACCTTTGATGCATTCTCATCTCAG
CTTTGCTGGGTGGATGCAGGCACCCATAGGGCAGAATGCCTGAACCCAGCTCAGCCCGGCAGACGCAAAG
TTCTCGAAGGGCTCCAGTATCCTTTCGCTGTGACTAGCTATGGGAAGAATTTGTACTACACAGACTGGAA
GACGAATTCAGTGATTGCCATGGACCTTGCTATATCCAAAGAGATGGATACCTTCCACCCACACAAGCAG
ACCCGGCTATATGGCATCACCATCGCCCTGTCCCAGTGTCCCCAAGGCCACAATTACTGCTCAGTGAATA
ATGGTGGATGTACCCACCTCTGCTTGCCCACTCCAGGGAGCAGGACCTGCCGATGTCCTGACAACACCCT
GGGAGTTGACTGCATTGAACGGAAATGA

Translation (1245 aa):
MLDASGCSWAMWTWALLQLLLLVGPGGCLNRQELFPFGPGQGDLELEAGDDVVSPSLELIGELSFYDRTD
ITSVYVTTNGIIAMSEPPATEYHPGTFPPSFGSVAPFLADLDTTDGLGNVYYREDLSPFIIQMAAEYVQR
GFPEVSFQPTSVVVVTWESVAPYGGPSSSPAEEGKRNTFQAVLASSNSSSYAIFLYPEDGLQFFTTFSKK
DESQVPAVVGFSKGLVGFLWKSNGAYNIFANDRESIENLAKSSNAGHQGVWVFEIGSPATAKGVVSADVN
LDLDDDGADYEDEDYDLVTSHLGLEDVATPSPSHSPRRGYPDPHNVPRILSPGYEATERPRGVPTERTRS
FQLPAERFPQHHPQVIDVDEVEETGVVFSYNTGSQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNG
RQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGG
IIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYG
ASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQECAHDDARPALPSTQQ
LSVDSVFVLYNKEERILRYALSNSIGPVRDGSPDALQNPCYIGTHGCDSNAACRPGPGTQFTCECSIGFR
GDGQTCYDIDECSEQPSRCGNHAVCNNLPGTFRCECVEGYHFSDRGTCVAAEDQRPINYCETGLHNCDIP
QRAQCIYMGGSSYTCSCLPGFSGDGRACRDVDECQHSRCHPDAFCYNTPGSFTCQCKPGYQGDGFRCMPG
EVSKTRCQLEREHILGAAGGADAQRPTLQGMFVPQCDEYGHYVPTQCHHSTGYCWCVDRDGRELEGSRTP
PGMRPPCLSTVAPPIHQGPVVPTAVIPLPPGTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIG
LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG
TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ
LCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ
TRLYGITIALSQCPQGHNYCSVNNGGCTHLCLPTPGSRTCRCPDNTLGVDCIERK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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