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Report for CCDS26256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26256.1 Public Mus musculus 13 Yae1d1 23 108 98 CCDS HistoryNCBI Gene:67008Re-query CCDS DB by CCDS ID:26256.1Re-query CCDS DB by GeneID:67008See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099735.5 ENSMUSP00000097324.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099735.5Link to Ensembl Protein Viewer:ENSMUSP00000097324.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099735Re-query CCDS DB by Protein ID:ENSMUSP00000097324
Original member Current member NCBI NM_025904.3 NP_080180.1 Accepted alive Link to Nucleotide Sequence:NM_025904.3Link to Protein Sequence:NP_080180.1Re-query CCDS DB by Nucleotide ID:NM_025904Re-query CCDS DB by Protein ID:NP_080180Link to BLAST:NP_080180.1

Chromosomal Locations for CCDS 26256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 17989380 17989782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17991628 17991749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17993181 17993306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGTCTTGGTTTCGAGCGGCTCCGGAGAACGCGAGCCCTGGAGACCAGGACGTGTTTGACGAGGAAGCGG
ACGAGTCTCTGTTAGCGCAGCGGGAATGGCAGGGTCACATGCGGAAACGAGTCCAAGAGGGTTACAGAGA
TGGGCTAGATGCCGGCAAAGCACTTACTCTTCAACGGGGCTTCAATCAAGGGTACAAAGAGGGTGCAGAC
GTCATTATAAACTATGGACTCCTTAGAGGAACACTGAGTGCTTTGCTTTCCTGGTGTCACCTTCATGGTA
ATAGTTCGACTCTGATCAGTAAGATAAGTAACCTCCTGGACACAGTTGACCAGTGTGAAGAGTGTGTGCT
CAGACGTCTGAAATCGGTTACATCACAGCCACGAGTTACGGATTTATTGGACGCCATTGAGGATATGGAC
CTTTGTCACGTAGTTCCGTCAGACCAAGCGAAAGGTGACAGTAACGCTGAGATTAACACCGATTCTGACA
GTCCAAATGGGATGGGTTGTTCACATCCAGAACATTGTAGACCAAAAGAGCATGCACATTTGGAAAAACC
AAGCCTCTCTTGGATTCTGGAGCAGACATCCAGTTTAGTGAAACAGCTGGGAGTACCGGCAGACATATTA
CAGCACCTGAGACAACTATAA

Translation (216 aa):
MSWFRAAPENASPGDQDVFDEEADESLLAQREWQGHMRKRVQEGYRDGLDAGKALTLQRGFNQGYKEGAD
VIINYGLLRGTLSALLSWCHLHGNSSTLISKISNLLDTVDQCEECVLRRLKSVTSQPRVTDLLDAIEDMD
LCHVVPSDQAKGDSNAEINTDSDSPNGMGCSHPEHCRPKEHAHLEKPSLSWILEQTSSLVKQLGVPADIL
QHLRQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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