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Report for CCDS26311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26311.1 Public Mus musculus 13 Vmn1r192 23 108 98 CCDS HistoryNCBI Gene:252907Re-query CCDS DB by CCDS ID:26311.1Re-query CCDS DB by GeneID:252907See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26311.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072632.5 ENSMUSP00000072426.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072632.5Link to Ensembl Protein Viewer:ENSMUSP00000072426.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000072632Re-query CCDS DB by Protein ID:ENSMUSP00000072426
Original member Current member EBI ENSMUST00000238109.1 ENSMUSP00000157643.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238109.1Link to Ensembl Protein Viewer:ENSMUSP00000157643.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238109Re-query CCDS DB by Protein ID:ENSMUSP00000157643
Original member Current member NCBI NM_145845.1 NP_665844.1 Accepted alive Link to Nucleotide Sequence:NM_145845.1Link to Protein Sequence:NP_665844.1Re-query CCDS DB by Nucleotide ID:NM_145845Re-query CCDS DB by Protein ID:NP_665844Link to BLAST:NP_665844.1

Chromosomal Locations for CCDS 26311.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22187146 22188048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAACTGGAATAATATTATCCACACAATAATCTTTCTTTCTCTGACTGGACCTGGAATTCTGGGAAATA
CCCTAATATTTGTGAGACATATATACATGCCTGCCTTGTGGATTGAGAAAAAGCCTGTTGACCTTATTCT
CATCCACTTGGCTTTTTCTAATATAATCATTATTTGTAGCACAGGGATCAGAGATATAGCCACAGTGTTC
TATTTCAGAAACTTCCTAGGTGATACTGGTTGTAAAACTGTGGTTTATCTGGCAAGGATGGCACGGGGCC
TCTCCATCTGCACCACCTGTCTCCTCAGTGTGGTCCAGGCTATCACCATCAGTCCCAGGACTGCCCTTTG
GACAAAGCTCAAACCACAAACAGCATGCCAAGTTCTTCCCTTTATCCTTGTCTTTTGGATTGTTAATGTT
CTCATAAGCTCCAACTTGCTCTCCTACATCAAAGCAGGCAGTAGCTTGAACAGGTCTGTAGCTGCAACAT
TCATTGGCCACTGCTATATGCTCCAATCAAGACACATCATCAAGTGGTTTTTCCTCTCTCTCATGACTCT
TCGTGATGTCATCTTTCAGAGTCTCATGGGCTGGAGCAGTGGGTCCATGGCTCTCCATCTGTATAAGCAT
CACAAGCATGTCCTCTACCTTTACAGCTCCAGGTCTGCAAACAACTCTGCTCCAGAAATCAGAGCTACAT
GGAGGGTTCTCACTCTTATGACCTGCTTCCTTTTCTTCTATTGGGTAGATTTCATTCTCTCCTTCTACAC
AGGTTTTTCAGTGACACATGATTCTAGTTCACTAAATATGAAAACATTTTTAGAACTTGGTTATGCTAGT
TTCAGCCCCTATGTTCTGATCAGCAGAGATTTTCGTGTTCCTAATGTCTTGCATGCCCACTAA

Translation (300 aa):
MNWNNIIHTIIFLSLTGPGILGNTLIFVRHIYMPALWIEKKPVDLILIHLAFSNIIIICSTGIRDIATVF
YFRNFLGDTGCKTVVYLARMARGLSICTTCLLSVVQAITISPRTALWTKLKPQTACQVLPFILVFWIVNV
LISSNLLSYIKAGSSLNRSVAATFIGHCYMLQSRHIIKWFFLSLMTLRDVIFQSLMGWSSGSMALHLYKH
HKHVLYLYSSRSANNSAPEIRATWRVLTLMTCFLFFYWVDFILSFYTGFSVTHDSSSLNMKTFLELGYAS
FSPYVLISRDFRVPNVLHAH


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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