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Report for CCDS26385.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26385.2 Public Mus musculus 13 Mrs2 23 108 98 CCDS HistoryNCBI Gene:380836Re-query CCDS DB by CCDS ID:26385.2Re-query CCDS DB by GeneID:380836See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26385.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26385.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021772.3 ENSMUSP00000021772.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021772.3Link to Ensembl Protein Viewer:ENSMUSP00000021772.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021772Re-query CCDS DB by Protein ID:ENSMUSP00000021772
Original member Current member NCBI NM_001013389.2 NP_001013407.2 Accepted alive Link to Nucleotide Sequence:NM_001013389.2Link to Protein Sequence:NP_001013407.2Re-query CCDS DB by Nucleotide ID:NM_001013389Re-query CCDS DB by Protein ID:NP_001013407Link to BLAST:NP_001013407.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013407.2 434 Q5NCE8 434 100% 0 0

Chromosomal Locations for CCDS 26385.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24993078 24993188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24993670 24993783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24994725 24994842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24995345 24995497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24997028 24997144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24998925 24999055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25001627 25001800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25004943 25005055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25006439 25006475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25018520 25018593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25020082 25020244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGAATGCCTGCGCTGCCTGCCCGGGCTGCTGCCCCGCGCCGCGCAGCCCCGGAGGGCCCTGTGGACGG
CGGTCGCGCGCCTGAGCCTCGCTGCCTGCGGCGGCCGCGCGACCCCTTTGCGCTCCCGGAGCCCGAAAGC
GTCGAGCACAGCCCGCGCTGCAGGTGATGTGCTCCGGTTTAGAACCTCGGATGCCTCTCAAGCCACTTTA
GCCAGCGTGGCCCAGGTGTTTGCTGTGACAAAGTTTGACAAAGAAGGAAACGTTACCTCTTTTGAGAGGA
AGAAAACTGAACTATACCATGAGTTAGCACTCCAGGCCAGAGACTTGAGGTTTCAGCACGTGATGAGCAT
CACTACTAGAAACAACAGGATCATCATGAGGATGGAGTATTTGAAGGCTGTGATAACTCCAGAGTGTCTT
CTGATACTAGATTATCGGAATTTAAATTTGGAGCACTGGCTGTTTCGGGAACTGCCCTCACAGCTGGCTG
GAGAAGGTCAGCTGGTCACCTACCCATTACCATTTGAGTTCAGAGCTATTGAAGCACTCCTGCAGTACTG
GATCAGCACCCTTCGGGGGAGACTAAGCGTCCTGCAGCCACTGATCCTCGAGACCCTGGATGCTCTAGTG
GACCCCAAGCACTCGTCTGTGGACAGAAGCAAGCTGCATGTCCTACTCCAAAACGGCAAAAGTCTCTCTG
AGTTAGAAACAGACATTAAAATTTTCAAAGAGTCGATTTTGGAGCTCTTGGATGAGGAGGAGATGCTGGA
AGAACTCTGTCTGACCAAGTGGAGCGACCCACATGTCTTTGAGAAGAGCAGCACTGGGATCGACCACGCA
GAGGAGATGGAGCTGCTGCTGGAGAACTACTACCGCTTAGCAGAGGACCTCTCCAACGAGGCGCGCGAGC
TTCGGGTCCTGATTGACGATTCGCAGAGCATTATCTTCATCAACCTAGACAGCCATCGCAATGTGATGAT
GAGGTTAAATCTCCAGCTGACCATGGGAACCTTCTCCCTTTCACTCTTTGGTCTGATGGGAGTTGCTTTT
GGCATGAATTTGGAATCTTCCCTTGAAGAGGACCATCGCGTGTTTTGGCTGGTTACGGGGATTATGTTTA
TGGGAAGTGGTCTCATCTGGAGGAGGTTGCTCTCATTCCTTGGAAGACAGCTGGAAGCTCCTGTGCCCCC
TGTGATGACCTCCTTACCTAAAAAGACCCTTCTGGCCAATAGAAGGATGGACGTGAAAAACAGCCTCAGG
CCGGAAGGACTTGGAGCAAGCAGGACTATCCTGGCAAGCCGCTAG

Translation (434 aa):
MECLRCLPGLLPRAAQPRRALWTAVARLSLAACGGRATPLRSRSPKASSTARAAGDVLRFRTSDASQATL
ASVAQVFAVTKFDKEGNVTSFERKKTELYHELALQARDLRFQHVMSITTRNNRIIMRMEYLKAVITPECL
LILDYRNLNLEHWLFRELPSQLAGEGQLVTYPLPFEFRAIEALLQYWISTLRGRLSVLQPLILETLDALV
DPKHSSVDRSKLHVLLQNGKSLSELETDIKIFKESILELLDEEEMLEELCLTKWSDPHVFEKSSTGIDHA
EEMELLLENYYRLAEDLSNEARELRVLIDDSQSIIFINLDSHRNVMMRLNLQLTMGTFSLSLFGLMGVAF
GMNLESSLEEDHRVFWLVTGIMFMGSGLIWRRLLSFLGRQLEAPVPPVMTSLPKKTLLANRRMDVKNSLR
PEGLGASRTILASR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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