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Report for CCDS26392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26392.1 Public Mus musculus 13 Prl3c1 23 108 98 CCDS HistoryNCBI Gene:27372Re-query CCDS DB by CCDS ID:26392.1Re-query CCDS DB by GeneID:27372See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018066.12 ENSMUSP00000018066.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018066.12Link to Ensembl Protein Viewer:ENSMUSP00000018066.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018066Re-query CCDS DB by Protein ID:ENSMUSP00000018066
Original member Current member NCBI NM_013766.2 NP_038794.1 Accepted alive Link to Nucleotide Sequence:NM_013766.2Link to Protein Sequence:NP_038794.1Re-query CCDS DB by Nucleotide ID:NM_013766Re-query CCDS DB by Protein ID:NP_038794Link to BLAST:NP_038794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038794.1 212 Q9QUN5 212 100% 0 0

Chromosomal Locations for CCDS 26392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27196706 27196736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27199324 27199478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27200696 27200779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27202304 27202483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27203424 27203612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGCAGCTATCATTGACTCAAGCACGCACCTGGAAGGGTCTGTTCCTGTTGGTGTCATGCATGTTCCTGT
GGGTATATGTGACTGCCACACGATATGACCGGAAATCCAATGAAGAGATCTATGACAATCTGCTTTCCTC
TTCTCGTCACATCCATAGAGTTGCCAAAAAAATGTATAAAATCTTAGACTCAAAGTTAACTGAGGGAGTA
TGTTTTAGGAATAAAAACACCAAGATGTGCCAAACCATTTCTACACATTCTGTAAAAAAGAATGAAGACC
TTCTGAAAGTCATCATCAATGTTTCAAATTTCTGGACATATCCACTGAAAATGCTCATACCTGCAGTGTT
GACTCATCTAGATTCTGATGATGGGATGATGACAAGAGCTGTAGAGCTTAACTATGGAAATAAAGTCGTT
CTGGAGGGAGCAAAAGCTTTACTTAGTAGGATTCAGCCTGGAATTGAAGAAAATAACGAGCCTGACAGGT
GGTCAGACCTAAGAGAATTGAGGTCCTCCAAAAAAAGCAAGCACCTTCTTGCATTTTGTAAATTCTTCTA
CTGTCTACGCAAGGATACAAAAATGGTTACATGTTATCTCAGGGCTCTGAAGCATGGCAAAATCAAAACC
ATTTGCTAA

Translation (212 aa):
MQLSLTQARTWKGLFLLVSCMFLWVYVTATRYDRKSNEEIYDNLLSSSRHIHRVAKKMYKILDSKLTEGV
CFRNKNTKMCQTISTHSVKKNEDLLKVIINVSNFWTYPLKMLIPAVLTHLDSDDGMMTRAVELNYGNKVV
LEGAKALLSRIQPGIEENNEPDRWSDLRELRSSKKSKHLLAFCKFFYCLRKDTKMVTCYLRALKHGKIKT
IC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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