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Report for CCDS26397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26397.1 Public Mus musculus 13 Prl2b1 23 108 98 CCDS HistoryNCBI Gene:66392Re-query CCDS DB by CCDS ID:26397.1Re-query CCDS DB by GeneID:66392See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102954.9 ENSMUSP00000100019.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102954.9Link to Ensembl Protein Viewer:ENSMUSP00000100019.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102954Re-query CCDS DB by Protein ID:ENSMUSP00000100019
Original member Current member NCBI NM_025532.3 NP_079808.1 Accepted alive Link to Nucleotide Sequence:NM_025532.3Link to Protein Sequence:NP_079808.1Re-query CCDS DB by Nucleotide ID:NM_025532Re-query CCDS DB by Protein ID:NP_079808Link to BLAST:NP_079808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079808.1 228 Q9DAZ2 228 100% 0 0

Chromosomal Locations for CCDS 26397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27383452 27383637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27385113 27385292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27386380 27386487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27388393 27388574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27390746 27390776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGCTACTGTCTTTGACTCAAATGCTTTCCTCAAGGGCATCATCACGCCTGTTCCTGGTGTCCTACCTGC
TTTTATGGGAGAATGTAGTCTCTACATCCACCTGTGCTGAGAAGGATGCCACCATCCAGGACTCCTTAGA
GAAACTTCTTACATTGACAACCTTTATGTCTCAAGTTGTCAGTAGTGAAACTGCAAAACTCTTCACTGAA
TTTAATAATCAGTATGCCCAGGGAAAGAGATACAATGACAGAATCCCTGGGACTTGTCACACTGAGTTTT
TTGATACTCCAGTAAACAAGGAGCAATCTCTAGTAAGAACTCCAGAAACACTATTGACATTGGTACACAG
TCTATTGAATTCTTGGACGAACGCTCTGAATCATCTTGTGAATGAAATGTCTACAATGCAAGGAGACACT
TCTTCTCTTATCTCCAAAGCCAGAGAAATTCAGGCAAAATTTGATGAACTCACGACAGGTGTTAAAATAG
TTCAAAGCATGATTGGAGAGAGAGATATTGCGACCTACTCTGCCTGGTCTGGACTGGCATCTTTGCAGTC
AAGCAATGAAGATGTTCGCTGTTTTTCTTTTTATACCATGATCCGCTGCCTGCTCAGAGATTCTCGAAAA
GTAAATACTTACCTTGAGGTCATCAAATACAAAATGGTTGATCAAAACAACTGCTAA

Translation (228 aa):
MLLSLTQMLSSRASSRLFLVSYLLLWENVVSTSTCAEKDATIQDSLEKLLTLTTFMSQVVSSETAKLFTE
FNNQYAQGKRYNDRIPGTCHTEFFDTPVNKEQSLVRTPETLLTLVHSLLNSWTNALNHLVNEMSTMQGDT
SSLISKAREIQAKFDELTTGVKIVQSMIGERDIATYSAWSGLASLQSSNEDVRCFSFYTMIRCLLRDSRK
VNTYLEVIKYKMVDQNNC


Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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