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Report for CCDS26443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26443.1 Public Mus musculus 13 Ripk1 23 108 98 CCDS HistoryNCBI Gene:19766Re-query CCDS DB by CCDS ID:26443.1Re-query CCDS DB by GeneID:19766See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021844.14 ENSMUSP00000021844.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021844.14Link to Ensembl Protein Viewer:ENSMUSP00000021844.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021844Re-query CCDS DB by Protein ID:ENSMUSP00000021844
Original member Current member EBI ENSMUST00000167374.8 ENSMUSP00000129831.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167374.8Link to Ensembl Protein Viewer:ENSMUSP00000129831.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167374Re-query CCDS DB by Protein ID:ENSMUSP00000129831
Original member Current member NCBI NM_001359997.1 NP_001346926.1 Accepted alive Link to Nucleotide Sequence:NM_001359997.1Link to Protein Sequence:NP_001346926.1Re-query CCDS DB by Nucleotide ID:NM_001359997Re-query CCDS DB by Protein ID:NP_001346926Link to BLAST:NP_001346926.1
Original member Current member NCBI NM_009068.3 NP_033094.3 Accepted alive Link to Nucleotide Sequence:NM_009068.3Link to Protein Sequence:NP_033094.3Re-query CCDS DB by Nucleotide ID:NM_009068Re-query CCDS DB by Protein ID:NP_033094Link to BLAST:NP_033094.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346926.1 656 Q60855 656 100% 0 0
NP_033094.3 656 Q60855 656 100% 0 0

Chromosomal Locations for CCDS 26443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34009657 34009820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34010545 34010701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34013250 34013387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34015126 34015357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34016997 34017146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34021381 34021457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34026742 34026832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34027718 34028251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34030040 34030180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34032496 34032782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGCAACCAGACATGTCCTTGGACAATATTAAGATGGCATCCAGTGACCTGCTGGAGAAGACAGACCTAG
ACAGCGGAGGCTTCGGGAAGGTGTCCTTGTGTTACCACAGAAGCCATGGATTTGTCATCCTGAAAAAAGT
ATACACAGGGCCCAACCGCGCTGAGTACAATGAGGTTCTCTTGGAAGAGGGGAAGATGATGCACAGACTG
AGACACAGTCGAGTGGTGAAGCTACTGGGCATCATCATAGAAGAAGGGAACTATTCGCTGGTGATGGAGT
ACATGGAGAAGGGCAACCTGATGCACGTGCTAAAGACCCAGATAGATGTCCCACTTTCATTGAAAGGAAG
GATAATCGTGGAGGCCATAGAAGGCATGTGCTACTTACATGACAAAGGTGTGATACACAAGGACCTGAAG
CCTGAGAATATCCTCGTTGATCGTGACTTTCACATTAAGATAGCCGATCTTGGTGTGGCTTCCTTTAAGA
CATGGAGCAAACTGACTAAGGAGAAAGACAACAAGCAGAAAGAAGTGAGCAGCACCACTAAGAAGAACAA
TGGTGGTACCCTTTACTACATGGCACCCGAACACCTGAATGACATCAATGCAAAGCCCACGGAGAAGTCG
GACGTGTACAGCTTTGGCATTGTCCTTTGGGCAATATTTGCAAAAAAGGAGCCCTATGAGAATGTCATCT
GTACTGAGCAGTTCGTGATCTGCATAAAATCTGGGAACAGGCCAAATGTAGAGGAAATCCTTGAGTACTG
TCCAAGGGAGATCATCAGCCTCATGGAGCGGTGCTGGCAGGCGATCCCAGAAGACAGGCCAACATTTCTT
GGCATTGAAGAAGAATTTAGGCCTTTTTACTTAAGTCATTTTGAAGAATATGTAGAAGAGGATGTGGCAA
GTTTAAAGAAAGAGTATCCAGATCAAAGCCCAGTGCTGCAGAGAATGTTTTCACTGCAGCATGACTGTGT
ACCCTTACCTCCGAGCAGGTCAAATTCAGAACAACCTGGATCGCTGCACAGTTCCCAGGGGCTCCAGATG
GGTCCTGTGGAGGAGTCCTGGTTTTCTTCCTCCCCAGAGTACCCACAGGACGAGAATGATCGCAGTGTGC
AGGCTAAGCTGCAAGAGGAAGCCAGCTATCATGCTTTTGGAATATTTGCAGAGAAACAGACAAAACCGCA
GCCAAGGCAGAATGAGGCTTACAACAGAGAGGAGGAAAGGAAACGAAGGGTCTCTCATGACCCCTTTGCA
CAGCAGAGAGCTCGTGAGAATATTAAGAGTGCAGGAGCAAGAGGTCATTCTGATCCCAGCACAACGAGTC
GTGGAATTGCAGTGCAACAGCTGTCATGGCCAGCCACCCAAACAGTTTGGAACAATGGATTGTATAATCA
GCATGGATTTGGAACTACAGGTACAGGAGTTTGGTATCCGCCAAATCTAAGCCAAATGTATAGTACTTAT
AAAACTCCAGTGCCAGAGACCAACATACCGGGAAGCACACCCACCATGCCATACTTCTCTGGGCCAGTAG
CAGATGACCTCATAAAATATACTATATTCAATAGTTCTGGTATTCAGATTGGAAACCACAATTATATGGA
TGTTGGACTGAATTCACAACCACCAAACAATACTTGCAAAGAAGAGTCGACTTCCAGACACCAAGCCATC
TTTGATAACACCACTAGTCTGACTGATGAACACCTGAACCCTATCAGGGAAAACCTGGGAAGGCAGTGGA
AAAACTGTGCCCGCAAGCTGGGCTTCACTGAGTCTCAGATCGATGAAATCGACCATGACTATGAAAGAGA
TGGACTGAAAGAGAAAGTTTACCAAATGCTTCAGAAGTGGCTGATGCGGGAAGGCACCAAAGGGGCCACA
GTGGGAAAGTTGGCCCAGGCACTTCACCAATGTTGCAGGATAGACCTGCTGAACCACTTGATTCGTGCCA
GCCAGAGCTAA

Translation (656 aa):
MQPDMSLDNIKMASSDLLEKTDLDSGGFGKVSLCYHRSHGFVILKKVYTGPNRAEYNEVLLEEGKMMHRL
RHSRVVKLLGIIIEEGNYSLVMEYMEKGNLMHVLKTQIDVPLSLKGRIIVEAIEGMCYLHDKGVIHKDLK
PENILVDRDFHIKIADLGVASFKTWSKLTKEKDNKQKEVSSTTKKNNGGTLYYMAPEHLNDINAKPTEKS
DVYSFGIVLWAIFAKKEPYENVICTEQFVICIKSGNRPNVEEILEYCPREIISLMERCWQAIPEDRPTFL
GIEEEFRPFYLSHFEEYVEEDVASLKKEYPDQSPVLQRMFSLQHDCVPLPPSRSNSEQPGSLHSSQGLQM
GPVEESWFSSSPEYPQDENDRSVQAKLQEEASYHAFGIFAEKQTKPQPRQNEAYNREEERKRRVSHDPFA
QQRARENIKSAGARGHSDPSTTSRGIAVQQLSWPATQTVWNNGLYNQHGFGTTGTGVWYPPNLSQMYSTY
KTPVPETNIPGSTPTMPYFSGPVADDLIKYTIFNSSGIQIGNHNYMDVGLNSQPPNNTCKEESTSRHQAI
FDNTTSLTDEHLNPIRENLGRQWKNCARKLGFTESQIDEIDHDYERDGLKEKVYQMLQKWLMREGTKGAT
VGKLAQALHQCCRIDLLNHLIRASQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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