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Report for CCDS26491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26491.1 Public Mus musculus 13 Rnf144b 23 108 98 CCDS HistoryNCBI Gene:218215Re-query CCDS DB by CCDS ID:26491.1Re-query CCDS DB by GeneID:218215See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068891.11 ENSMUSP00000071017.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068891.11Link to Ensembl Protein Viewer:ENSMUSP00000071017.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068891Re-query CCDS DB by Protein ID:ENSMUSP00000071017
Original member Current member EBI ENSMUST00000110111.3 ENSMUSP00000105738.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110111.3Link to Ensembl Protein Viewer:ENSMUSP00000105738.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110111Re-query CCDS DB by Protein ID:ENSMUSP00000105738
Original member Current member NCBI NM_001170643.1 NP_001164114.1 Accepted alive Link to Nucleotide Sequence:NM_001170643.1Link to Protein Sequence:NP_001164114.1Re-query CCDS DB by Nucleotide ID:NM_001170643Re-query CCDS DB by Protein ID:NP_001164114Link to BLAST:NP_001164114.1
Original member Current member NCBI NM_146042.4 NP_666154.3 Accepted alive Link to Nucleotide Sequence:NM_146042.4Link to Protein Sequence:NP_666154.3Re-query CCDS DB by Nucleotide ID:NM_146042Re-query CCDS DB by Protein ID:NP_666154Link to BLAST:NP_666154.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164114.1 301 Q8BKD6 301 100% 0 0
NP_666154.3 301 Q8BKD6 301 100% 0 0

Chromosomal Locations for CCDS 26491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 47207386 47207550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47220494 47220598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47228940 47229000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47237403 47237601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47239717 47239861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47242864 47242953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47244361 47244501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGACTCCGTCGATGGGCTCCAGTGTCTGACCATGACTGCGGAAAACCCACCCTCTGGAGACCTGATTC
CCGCCCCGCTCGTCACTTGCAAGCTCTGCCTGTGTGAACAGTCTCTGGACAAGATGACCATGCTCCAAGA
GTGCCAGTGTATCTTTTGTACACCCTGCCTGAAACAGTATATGGTGCTGTCAATCCGAGAAGGCTGTGGA
TCTCCTATCACTTGTCCTGACATGGTGTGCCTAAACCACGGGACCCTGCAGGAAACCGAGATTGCCTGTT
TGGTGCCTCTGGATGAGTTTCAGCTGTATCAGCGGCTCAAGTTTGAACGAGAGGTTCACATGGACCCCCT
CCGGACATGGTGTCCTGTTGCAGACTGCCAGACCGTGTGCCATATTTCAGCCGGAGACCCAGGCCAGCCA
GTGTTGGTGGAGTGCCCTTCTTGCCACCTGAAATTCTGCTCATGTTGCAAGGATGCTTGGCACGAGGAGT
CTTCCTGTAGAGACAGCCAGTCGGCGATGCCAGAGCATGGGGCTCTCTTTGGAACGGATGCGGACGCCCC
CATCAAGCAGTGCCCGGTTTGCCGCATTTACATTGAGCGCAACGAAGGCTGCGCCCAGATGATGTGCAAG
AACTGCAAGCACACATTTTGCTGGTACTGTCTGCAGAACCTGGACAATGACATATTCCTCAGGCACTATG
ACAAAGGGCCATGCAGGAATAAGCTCGGCCACTCGAGGGCATCGGTAATGTGGAACCGAACACAGGTAGT
GGGGATCCTTGTGGGATTAGGTGTCATTGCCTTGGTGACCTCACCCTTGCTGCTCCTGGCCTCTCCCTGT
ATAATCTGCTGTGTCTGCAAGTCCTGTCGCGGCAAGAAGAAAAAGCATGATCCATCCACAACCTAA

Translation (301 aa):
MDSVDGLQCLTMTAENPPSGDLIPAPLVTCKLCLCEQSLDKMTMLQECQCIFCTPCLKQYMVLSIREGCG
SPITCPDMVCLNHGTLQETEIACLVPLDEFQLYQRLKFEREVHMDPLRTWCPVADCQTVCHISAGDPGQP
VLVECPSCHLKFCSCCKDAWHEESSCRDSQSAMPEHGALFGTDADAPIKQCPVCRIYIERNEGCAQMMCK
NCKHTFCWYCLQNLDNDIFLRHYDKGPCRNKLGHSRASVMWNRTQVVGILVGLGVIALVTSPLLLLASPC
IICCVCKSCRGKKKKHDPSTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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