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Report for CCDS26518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26518.1 Public Mus musculus 13 Auh 23 108 98 CCDS HistoryNCBI Gene:11992Re-query CCDS DB by CCDS ID:26518.1Re-query CCDS DB by GeneID:11992See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021913.15 ENSMUSP00000021913.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021913.15Link to Ensembl Protein Viewer:ENSMUSP00000021913.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021913Re-query CCDS DB by Protein ID:ENSMUSP00000021913
Original member NCBI NM_016709.2 NP_057918.2 Updated not alive Link to Nucleotide Sequence:NM_016709.2Link to Protein Sequence:NP_057918.2Re-query CCDS DB by Nucleotide ID:NM_016709Re-query CCDS DB by Protein ID:NP_057918
Current member NCBI NM_016709.3 NP_057918.2 Accepted alive Link to Nucleotide Sequence:NM_016709.3Link to Protein Sequence:NP_057918.2Re-query CCDS DB by Nucleotide ID:NM_016709Re-query CCDS DB by Protein ID:NP_057918Link to BLAST:NP_057918.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057918.2 314 Q9JLZ3-1 314 99.3631% 0 2

Chromosomal Locations for CCDS 26518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52835474 52835551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52838086 52838133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52839558 52839608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52840877 52841064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52887241 52887297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52889103 52889195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52898650 52898736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52919001 52919088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52919199 52919266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52929455 52929641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCGGCGGCGGCTCCAGGCGCTCTGGGCGCCTTGAGAACGGTTGGCGTCCGCCTGGTGGCCGCGTGCT
GCGCGCGGCTCGGCCCCGCGGCCTGGGCTAGGGGTACCGCCCCGAGGAGGGGCTACAGCTCGGAGGTGAA
GACGGAGGATGAGTTGCGCGTGCGGCACCTGGAGGAGGAGAACCGAGGCATTGTGGTGCTCGGGATTAAC
AGAGCTTATGGGAAAAATGCACTCAGTAAAAATCTCCTCAAGATGTTATCAAAAGCGGTGGATGCATTAA
AGTCAGATAAGAAAGTTCGGACCATTATCATCAGAAGTGAAGTCCCTGGGATATTCTGTGCTGGTGCTGA
CCTTAAGGAACGAGCCAAGATGCATTCCAGTGAAGTTGGTCCCTTTGTCTCCAAGATCCGATCGGTGATC
AATGACATTGCAAACCTCCCGGTGCCCACCATCGCAGCCATAGACGGCCTTGCCCTCGGAGGGGGTCTGG
AGCTGGCTCTAGCGTGTGACATTCGAGTAGCAGCTTCCTCTGCAAAAATGGGCCTGGTTGAAACAAAGTT
GGCAATTATTCCTGGCGGAGGAGGGACACAGAGATTACCACGTGCCATCGGGATGTCCCTGGCTAAGGAA
CTCATCTTCTCTGCCCGAGTTCTTGACGGTCAAGAAGCCAAAGCTGTGGGCTTGATCAGCCATGTGTTAG
AACAGAACCAGGAAGGGGATGCAGCCTACAGGAAGGCGCTGGACCTGGCGAGAGAGTTTCTACCTCAGGG
GCCTGTTGCAATGAGAGTGGCCAAACTAGCAATTAACCAAGGGATGGAGGTCGACTTAGTAACAGGGTTA
GCCATAGAAGAAGCCTGCTATGCTCAGACCATCTCAACAAAGGACAGACTGGAAGGTCTTCTTGCTTTTA
AGGAGAAAAGACCTCCTCGCTACAAGGGAGAATAG

Translation (314 aa):
MAAAAPGALGALRTVGVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEENRGIVVLGIN
RAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVI
NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKE
LIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGL
AIEEACYAQTISTKDRLEGLLAFKEKRPPRYKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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