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Report for CCDS26587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26587.1 Public Mus musculus 13 Cts8 23 108 98 CCDS HistoryNCBI Gene:56094Re-query CCDS DB by CCDS ID:26587.1Re-query CCDS DB by GeneID:56094See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26587.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021891.4 ENSMUSP00000021891.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021891.4Link to Ensembl Protein Viewer:ENSMUSP00000021891.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021891Re-query CCDS DB by Protein ID:ENSMUSP00000021891
Original member Current member NCBI NM_019541.3 NP_062414.3 Accepted alive Link to Nucleotide Sequence:NM_019541.3Link to Protein Sequence:NP_062414.3Re-query CCDS DB by Nucleotide ID:NM_019541Re-query CCDS DB by Protein ID:NP_062414Link to BLAST:NP_062414.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062414.3 333 Q9JI81 333 100% 0 0

Chromosomal Locations for CCDS 26587.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61248154 61248253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61249203 61249320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61250907 61251069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61251523 61251747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61253315 61253461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61253551 61253673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61253956 61254081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGGTCCTGCTGTCTTGCTGGCCATCCTATGCTTGGGAGTGGCTGAAGTTACTCAATCATCTGATCCCA
GTTTGGATTCTGAATGGCAGGAGTGGAAGAGAAAATTTAACAAAAACTACAGCATGGAGGAAGAAGGACA
GAAGAGAGCAGTGTGGGAAGAAAACATGAAACTGGTCAAACAGCATAATATTGAATATGATCAGGGAAAG
AAAAACTTCACCATGGATGTCAATGCCTTTGGTGACATGACTGGTGAGGAATACAGGAAAATGCTGACTG
ATATTCCAGTCCCAAATTTTAGGAAGAAGAAAAGTATCCACCAACCTATTGCTGGTTATCTCCCCAAATT
TGTGGACTGGAGAAAAAGAGGCTGTGTGACTCCTGTGAAGAATCAGGGCACGTGTAATTCTTGTTGGGCT
TTTTCTGCGGCTGGTGCCATAGAAGGACAGATGTTCAGGAAAACAGGCAAACTGGTCCCACTGAGCACAC
AAAATCTAGTGGACTGTTCTAGACTTGAAGGGAATTTCGGCTGTTTTAAGGGCAGCACATTCCTTGCTTT
AAAGTACGTGTGGAAAAATAGAGGTCTAGAGGCTGAGTCAACCTATCCATACAAAGGAACGGACGGACAC
TGCAGGTACCACCCTGAACGTTCTGCTGCTAGAATCACTAGCTTTTCGTTTGTTTCAAACAGTGAGAAAG
ACTTAATGCGTGCTGTAGCAACTATCGGACCCATCTCTGTTGGAATTGATGCTAGACATAAATCTTTCAG
GTTGTATAGGGAAGGTATTTATTATGAGCCAAAGTGCAGCAGTAATATTATCAACCATTCTGTTCTGGTA
GTTGGCTATGGTTATGAAGGAAAGGAGTCAGATGGCAACAAATATTGGCTGATAAAGAACAGTCATGGTG
AGCAATGGGGCATGAATGGCTACATGAAGCTTGCCAGAGGCAGGAACAACCACTGTGGAATTGCTTCATA
TGCCGTCTACCCCAGAGTGTAA

Translation (333 aa):
MGPAVLLAILCLGVAEVTQSSDPSLDSEWQEWKRKFNKNYSMEEEGQKRAVWEENMKLVKQHNIEYDQGK
KNFTMDVNAFGDMTGEEYRKMLTDIPVPNFRKKKSIHQPIAGYLPKFVDWRKRGCVTPVKNQGTCNSCWA
FSAAGAIEGQMFRKTGKLVPLSTQNLVDCSRLEGNFGCFKGSTFLALKYVWKNRGLEAESTYPYKGTDGH
CRYHPERSAARITSFSFVSNSEKDLMRAVATIGPISVGIDARHKSFRLYREGIYYEPKCSSNIINHSVLV
VGYGYEGKESDGNKYWLIKNSHGEQWGMNGYMKLARGRNNHCGIASYAVYPRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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