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Report for CCDS26603.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26603.2 Public Mus musculus 13 Mfsd14b 23 108 98 CCDS HistoryNCBI Gene:66631Re-query CCDS DB by CCDS ID:26603.2Re-query CCDS DB by GeneID:66631See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26603.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26603.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054730.9 ENSMUSP00000062566.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054730.9Link to Ensembl Protein Viewer:ENSMUSP00000062566.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054730Re-query CCDS DB by Protein ID:ENSMUSP00000062566
Original member Current member EBI ENSMUST00000155487.7 ENSMUSP00000118180.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155487.7Link to Ensembl Protein Viewer:ENSMUSP00000118180.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155487Re-query CCDS DB by Protein ID:ENSMUSP00000118180
Original member NCBI NM_001083901.1 NP_001077370.1 Updated not alive Link to Nucleotide Sequence:NM_001083901.1Link to Protein Sequence:NP_001077370.1Re-query CCDS DB by Nucleotide ID:NM_001083901Re-query CCDS DB by Protein ID:NP_001077370
Current member NCBI NM_001083901.2 NP_001077370.1 Accepted alive Link to Nucleotide Sequence:NM_001083901.2Link to Protein Sequence:NP_001077370.1Re-query CCDS DB by Nucleotide ID:NM_001083901Re-query CCDS DB by Protein ID:NP_001077370Link to BLAST:NP_001077370.1
Original member NCBI NM_133680.3 NP_598441.3 Updated not alive Link to Nucleotide Sequence:NM_133680.3Link to Protein Sequence:NP_598441.3Re-query CCDS DB by Nucleotide ID:NM_133680Re-query CCDS DB by Protein ID:NP_598441
Current member NCBI NM_133680.4 NP_598441.3 Accepted alive Link to Nucleotide Sequence:NM_133680.4Link to Protein Sequence:NP_598441.3Re-query CCDS DB by Nucleotide ID:NM_133680Re-query CCDS DB by Protein ID:NP_598441Link to BLAST:NP_598441.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077370.1 507 Q8CIA9 507 100% 0 0
NP_598441.3 507 Q8CIA9 507 100% 0 0

Chromosomal Locations for CCDS 26603.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 65066613 65066861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65067863 65068005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65069644 65069741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65072005 65072117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65073556 65073627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65074986 65075099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65075484 65075702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65078354 65078468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65081400 65081527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65087089 65087151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65095619 65095714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65112504 65112617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGAGCACGGACGGGGAGTCGCCGGAGGAGCCGAGGTGGAAGGCGGTGGCCTCACCCAAGGCGTCAACCA
TGCCTGAGAAGCGCGGGAGCGCTCAGGCCGCGAGCGGCAGCTGGCTACAAGGTTTTGGCCACCCAAGTGT
TTACCATGCTGCTTTTGTCATCTTCTTGGAATTCTTTGCGTGGGGCCTGTTAACAACTCCAATGTTGACT
GTTTTACATGAAACATTTCCTCAACACACATTCCTCATGAATGGGCTCATTCAAGGTGTAAAGGGCCTGC
TCTCTTTTCTGAGTGCTCCGCTCATAGGCGCTCTCTCTGATGTTTGGGGCAGGAAGCCCTTTCTCCTTGG
CACGGTCTTCTTTACCTGCTTCCCTATCCCACTAATGAGGATTAACCCATGGTGGTATTTTGGCATGATT
TCTGTATCTGGAGTCTTCTCAGTCACTTTCTCTGTAATTTTTGCCTATGTAGCTGACTTCACTCAAGAGC
ATGAAAGAAGTACTGCTTATGGCTGGGTCTCAGCCACCTTTGCAGCTAGTCTGGTTAGCAGCCCAGCCAT
TGGGACATACCTCTCTGCAAACTATGGAGACAGTCTTGTTGTGCTAGTAGCCACACTGGTGGCTCTCCTA
GACATCTGCTTCATTTTGATAGCAGTTCCGGAATCTCTATCGGAGAAAATTAGACCTGCTTCCTGGGGAG
CTCAGATCTCTTGGAAACAAGCGGACCCTTTTGCGTCATTAAAGAAAGTTGGAAAAGATTCTACTGTCTT
ACTGATCTGCATCACAGTGTTTCTCTCATATCTTCCTGAAGCTGGGCAATATTCAAGCTTTTTTCTCTAT
CTCAGGCAGGTTATAGGTTTTGGATCTGTGAAAATTGTAGCATTCATAGCTATGGTAGGAATTCTGTCCA
TTGTGGCTCAGACAGTCTTCCTTAGCAAATTGATGAGATCACTAGGGAATAAGAACACTGTTCTCCTTGG
TTTGGGTTTTCAGATGCTCCAGCTTGCCTGGTATGGTTTTGGATCTCAGGCCTGGATGATGTGGGCAGCA
GGAACTGTGGCTGCCATGTCCAGCATTACATTCCCAGCAGTCAGTGCCCTCATCTCTCGGAATGCAGAGT
CAGATCAGCAAGGGGTTGCCCAGGGGATCGTAACTGGAATACGAGGGCTGTGCAATGGCCTAGGGCCAGC
ATTATATGGCTTCATATTCTACATGTTCCATGTTGAACTGAGTGAGTTGGGCCCAAAATTGAATTCTGAT
GATGATCCCTTACAGGGAGCTTTCATCCCAGGCCCACCATTTTTATTTGGAGCATGTATAGTTCTTATGT
CTTTTTTGGTTGCCTTATTCATCCCTGAATACCGTAAAACCAGTGGAGTTCAAAAACATAACAACAGCAC
CAGTGGCAGCCTAAGCACACCCCCTGAACGGGGCAGTGATGAGGACATTGAGCCATTACTACAAGACAGC
AGCATCTGGGAGCTTTCCTTTGAAGAGCCTGGAAATCAGTGCACTGAGCTATAA

Translation (507 aa):
MSTDGESPEEPRWKAVASPKASTMPEKRGSAQAASGSWLQGFGHPSVYHAAFVIFLEFFAWGLLTTPMLT
VLHETFPQHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINPWWYFGMI
SVSGVFSVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVLVATLVALL
DICFILIAVPESLSEKIRPASWGAQISWKQADPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLY
LRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAA
GTVAAMSSITFPAVSALISRNAESDQQGVAQGIVTGIRGLCNGLGPALYGFIFYMFHVELSELGPKLNSD
DDPLQGAFIPGPPFLFGACIVLMSFLVALFIPEYRKTSGVQKHNNSTSGSLSTPPERGSDEDIEPLLQDS
SIWELSFEEPGNQCTEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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