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Report for CCDS26616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26616.1 Public Mus musculus 13 Zfp58 23 108 98 CCDS HistoryNCBI Gene:238693Re-query CCDS DB by CCDS ID:26616.1Re-query CCDS DB by GeneID:238693See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076123.11 ENSMUSP00000075487.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076123.11Link to Ensembl Protein Viewer:ENSMUSP00000075487.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076123Re-query CCDS DB by Protein ID:ENSMUSP00000075487
Original member Current member EBI ENSMUST00000171518.7 ENSMUSP00000132285.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171518.7Link to Ensembl Protein Viewer:ENSMUSP00000132285.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171518Re-query CCDS DB by Protein ID:ENSMUSP00000132285
Original member Current member NCBI NM_001007575.2 NP_001007576.1 Accepted alive Link to Nucleotide Sequence:NM_001007575.2Link to Protein Sequence:NP_001007576.1Re-query CCDS DB by Nucleotide ID:NM_001007575Re-query CCDS DB by Protein ID:NP_001007576Link to BLAST:NP_001007576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007576.1 489 P16372 489 100% 0 0

Chromosomal Locations for CCDS 26616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 67490901 67492150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67494007 67494102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67494603 67494726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGCTGTCATTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGCCTGGAGCCTGATCAGT
GGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCATCTGGATTTCCTGGGTCTTGCTCTCTCTAA
GCCATTCCTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCT
GTGCACCCAGGAAAAACCGTCAACAAATGTAAAGATTTCAGCAAGGCCTTTTTTTGCAAGTCACTGCTTA
CTCAGCACCAGAGAATTCGTACAGGGGAGAAAGCCTTCAAGTGTGAAGAATGTGGTAAGGCCTTTAATAA
TCGTTCAAACCTTTCTGAACACAAGAGAATACATACTGGAGAAAAACCCTACAAATGTGAAGAATGTGGT
AAGGCCTTTCGTATTCGCTCAAAACTTTCTACACACCAGAGAGTTCATACGGGAGAAAAACCCTACAAAT
GTGAAGAATGTGGTAAGGCTTTTAATAGTCATTCAAACCTTTCTGAACACAAGAGAATCCATACTGGAGA
AAAACCGTACAAATGTGAAGAATGTGGCAAGGCCTTCAGTACTCGCTCAACATATTATAGACACCAGAAA
AACCATACTGGGAAAAAACCATACAAGTGTGAAGAATGCGCCAAAGAATTTTCCTACCCTTCATTGCTTA
AGGTACATCAAAGAATTCATTCTGCAGAGAAATCTTACAAGTGTGAAGAATGTGGGAAACCATTTTACTG
TCCTTTATTGCTTAAGAAGCATCAAATAATTCATTCTGCAGAGAAACCCTACAAGTGTGCAGAATGTGGC
AAAGCCTTTCACTACCCTTCATTGCTTAAGCGACATCAAAGAATTCATGCTGGAAAGAAACCCTGTAAGT
GTAAAGACTGCGACAGGGCATTTTACTCTTCCGCATTCCTTAAGCGTCATCAAAGAATTCATTCTGAAGA
GAATTCCTACAAGTGTGGAGAATGTGGCAAAAGGTTTTGTTCTTTTCCACACCTTCAATATCACCAAAGA
TTTCATTCTGGAGAGAAACCATACAAATGTGAACAATGTGGGAAAACATTTTCTACTCTCTCTTACCTTC
CTTGGCATAAATTGCGTCATTCTGGGGAGAAGTCATACAAATGTGAAAAATGTGGGAAAATGTTTTACTC
TACTTTGGACCTTAAAAAACACCAAAAAATTCATGAATATAAGTGTGGGGAATGTCACTATGGCTTTCCT
AATTATGCAGCCCTTACTGCACACCAGAGAGTTCATACTGGAGAGAAACCTCATGTATGCGAACAATGTG
GGAAAGACTTTTCTAGGATCGATAGCCTCAATCAGCATCAGCTTGTTCATACTGGAGAGAAACCCTATAA
ATGTGAAAAATGTGGCAAGTGCTTTTACCGATCTTCATCCCTTAAAAGACATCAAGGAATTCACTCTTAA

Translation (489 aa):
MLSFWDVAIDFSPEERECLEPDQWDLYRDVMLENYSHLDFLGLALSKPFLVTFLEQRQGPWDVKRQAAAA
VHPGKTVNKCKDFSKAFFCKSLLTQHQRIRTGEKAFKCEECGKAFNNRSNLSEHKRIHTGEKPYKCEECG
KAFRIRSKLSTHQRVHTGEKPYKCEECGKAFNSHSNLSEHKRIHTGEKPYKCEECGKAFSTRSTYYRHQK
NHTGKKPYKCEECAKEFSYPSLLKVHQRIHSAEKSYKCEECGKPFYCPLLLKKHQIIHSAEKPYKCAECG
KAFHYPSLLKRHQRIHAGKKPCKCKDCDRAFYSSAFLKRHQRIHSEENSYKCGECGKRFCSFPHLQYHQR
FHSGEKPYKCEQCGKTFSTLSYLPWHKLRHSGEKSYKCEKCGKMFYSTLDLKKHQKIHEYKCGECHYGFP
NYAALTAHQRVHTGEKPHVCEQCGKDFSRIDSLNQHQLVHTGEKPYKCEKCGKCFYRSSSLKRHQGIHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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