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Report for CCDS26628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26628.1 Public Mus musculus 13 Irx2 23 108 98 CCDS HistoryNCBI Gene:16372Re-query CCDS DB by CCDS ID:26628.1Re-query CCDS DB by GeneID:16372See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074372.5 ENSMUSP00000073976.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074372.5Link to Ensembl Protein Viewer:ENSMUSP00000073976.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074372Re-query CCDS DB by Protein ID:ENSMUSP00000073976
Original member Current member NCBI NM_010574.4 NP_034704.1 Accepted alive Link to Nucleotide Sequence:NM_010574.4Link to Protein Sequence:NP_034704.1Re-query CCDS DB by Nucleotide ID:NM_010574Re-query CCDS DB by Protein ID:NP_034704Link to BLAST:NP_034704.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034704.1 474 P81066 474 100% 0 0

Chromosomal Locations for CCDS 26628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 72629062 72629313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72630571 72630976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72631257 72631970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72632586 72632638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGTCCTACCCGCAGGGCTACCTGTACCAAGCGCCCGGCTCGCTGGCGCTCTACTCGTGCCCCGCGTACG
GCGCGTCCGCGCTGGCGGCGCCGCGCAGCGAGGAGCTGGCGCGTTCGGCGTCGGGCTCCGCGTTCAGCCC
GTACCCCGGCTCGGCGGCCTTCACAGCGCAGGCGGCAACCGGCTTCGGCAGCCCGCTGCAGTACTCGGCG
GACGCCGCCGCCGCCGCGGCTGCCGGCTTCCCGTCCTACGTGGGCTCGCCATACGACACGCACACCACCG
GAATGACTGGCGCCATCAGCTACCATCCATATGGCAGTGCGGCCTATCCATACCAGCTCAACGACCCCGC
GTACCGTAAGAACGCTACGCGGGACGCCACTGCCACACTGAAAGCCTGGCTCAACGAACACCGAAAGAAC
CCGTACCCCACCAAGGGAGAGAAGATCATGCTGGCCATTATCACCAAGATGACCCTCACGCAGGTCTCCA
CCTGGTTCGCCAACGCGCGCCGACGTCTCAAGAAGGAGAACAAAATGACCTGGGCCCCAAGGAACAAAAG
CGAGGATGAGGACGAGGACGAGGGAGATGCTTCCAGAAGCAAGGAGGAGAGTTCAGACAAGGCACAGGAT
GGCACAGAGACCTCTGCGGAGGACGAAGGGATCAGTCTACACGTCGACTCGCTCACGGACCACTCGTGCT
CAGCGGAGTCAGATGGGGAAAAATTGCCCTGCCGCGCCGGGGATGCCTTGTGCGAATCAGGCTCAGAGTG
TAAGGACAAGTTTGAGGACCTGGAGGACGAGGAGGACGAGGAAGACGAGTGCGAGCGGGACCTGGCGCCA
CCCAAGCCCGTAACCTCCTCGCCTCTCACCGGCGTGGAGGCACCCCTGCTGAGCCCGGCGCCCGAAGCCG
CGCCGCGCGGTGGCAGCGGTGGCAAGACGCCCCTAGGCAGCCGGACGTCGCCAGGAGCGCCGCCGCCCGC
CAGCAAACCCAAGCTGTGGTCGCTGGCCGAGATAGCCACGTCGGACCTCAAGCAACCAAGCTTGGGCCCG
GGTTGCGGGCCTCCGGGGCTGCCTGCTGCCGCCGCGCCTGCCTCGACTGGGGCCCCTCCGGGAGGCTCGC
CCTACTCTGCTTCGCCCCTGCTGGGCCGCCACCTCTATTACACGTCCCCTTTCTATGGCAACTACACAAA
CTACGGGAACTTAAACGCAGCGCTGCAAGGCCAGGGCCTTCTGCGGTACAATACCGCGGCCTCCTCACCA
GGCGAGACACTGCACGCCATGCCCAAGGCGGCCAGCGACACGGGCAAGGCGGGCTCGCATTCACTGGAGT
CCCACTACAGGCCTCCGGGCGGCGGCTACGAGCCCAAGAAAGATACCAGTGAGGGCTGTGCAGTTGTTGG
TGCAGGCGTCCAGACCTACCTATAG

Translation (474 aa):
MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAATGFGSPLQYSA
DAAAAAAAGFPSYVGSPYDTHTTGMTGAISYHPYGSAAYPYQLNDPAYRKNATRDATATLKAWLNEHRKN
PYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRNKSEDEDEDEGDASRSKEESSDKAQD
GTETSAEDEGISLHVDSLTDHSCSAESDGEKLPCRAGDALCESGSECKDKFEDLEDEEDEEDECERDLAP
PKPVTSSPLTGVEAPLLSPAPEAAPRGGSGGKTPLGSRTSPGAPPPASKPKLWSLAEIATSDLKQPSLGP
GCGPPGLPAAAAPASTGAPPGGSPYSASPLLGRHLYYTSPFYGNYTNYGNLNAALQGQGLLRYNTAASSP
GETLHAMPKAASDTGKAGSHSLESHYRPPGGGYEPKKDTSEGCAVVGAGVQTYL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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