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Report for CCDS26704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26704.1 Public Mus musculus 13 Polk 23 108 98 CCDS HistoryNCBI Gene:27015Re-query CCDS DB by CCDS ID:26704.1Re-query CCDS DB by GeneID:27015See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022172.11 ENSMUSP00000022172.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022172.11Link to Ensembl Protein Viewer:ENSMUSP00000022172.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022172Re-query CCDS DB by Protein ID:ENSMUSP00000022172
Original member Current member NCBI NM_012048.3 NP_036178.1 Accepted alive Link to Nucleotide Sequence:NM_012048.3Link to Protein Sequence:NP_036178.1Re-query CCDS DB by Nucleotide ID:NM_012048Re-query CCDS DB by Protein ID:NP_036178Link to BLAST:NP_036178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036178.1 852 Q9QUG2-1 852 100% 0 0

Chromosomal Locations for CCDS 26704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96482170 96482254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96482458 96482491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96483491 96484405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96486808 96486979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96489182 96489278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96490937 96490969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96493829 96493995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96495408 96495532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96496603 96496842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96501519 96501672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96504511 96504642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96508212 96508364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96516639 96516758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96519029 96519160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGGATAACACAAAGGAAAAGGACAACTTCAAAGACGACCTCCTGCTCCGCATGGGACTAAACGATAACA
AAGCAGGCATGGAAGGGTTGGATAAGGAGAAAATTAACAAAATTATCATGGAAGCCACAAAGGGGTCCAG
ATTTTATGGAAATGAGCTCAAGAAGGAAAAGCAAGTCAATCAACGGATTGAAAATATGATGCAACAAAAA
GCTCAAATTACCAGCCAGCAACTAAGGAAAGCTCAATTACAGGTTGACAAATTTGCAATGGAGTTAGAAC
GGAACCGGAATTTGAACAATACCATAGTTCATGTTGACATGGACGCTTTCTATGCAGCTGTGGAAATGAG
GGACAACCCGGAACTGAAGGATAAACCCATTGCTGTAGGATCCATGAGCATGTTGGCTACTTCGAATTAC
CATGCAAGGAGGTTTGGTGTCCGTGCAGCCATGCCAGGATTTATTGCTAAGAGGCTCTGCCCACAACTTA
TTATAGTGCCCCCAAACTTTGACAAATATAGAGCTGTGAGTAAGGAGGTTAAGGAGATACTTGCTGAATA
TGATCCCAATTTTATGGCCATGAGTCTGGACGAAGCCTACTTGAATATAACACAGCACTTGCAGGAAAGG
CAAGATTGGCCTGAGGACAAAAGAAGATACTTCATCAAGATGGGAAACTACTTAAAAATCGACACACCCA
GACAGGAAGCTAACGAGCTGACTGAGTATGAGCGGTCCATCTCCCCGCTGCTTTTTGAAGATAGTCCTCC
TGATTTGCAACCCCAAGGAAGTCCTTTCCAACTGAACTCTGAAGAACAAAACAATCCTCAAATAGCCCAA
AATTCAGTTGTTTTTGGAACATCAGCTGAGGAAGTGGTAAAGGAAATTCGCTTCAGAATTGAACAAAAAA
CAACGCTGACAGCCAGCGCAGGCATCGCCCCCAATACAATGTTAGCAAAAGTGTGCAGTGATAAGAATAA
GCCAAACGGACAGTACCAGATCCTTCCCAGCAGGAGCGCGGTGATGGACTTCATCAAGGACCTGCCTATT
AGAAAGGTTTCTGGGATAGGAAAAGTTACAGAGAAAATGTTAATGGCTCTCGGGATTGTTACTTGCACAG
AACTCTACCAACAGAGAGCGTTGCTGTCTCTCCTTTTCTCTGAAACCTCTTGGCATTATTTTCTTCACAT
CGCGCTGGGTCTAGGTTCAACAGACCTGGCAAGGGATGGAGAAAGGAAAAGCATGAGTGTTGAAAGGACA
TTCAGTGAGATAAGTAAGACAGAGGAACAGTACAGCCTGTGCCAAGAACTGTGCGCTGAGCTCGCCCACG
ACCTCCAGAAGGAAGGACTTAAGGGAAGAACCGTCACCATTAAGCTGAAGAACGTGAATTTTGAAGTAAA
AACTCGTGCATCTACCGTTCCGGCCGCCATTTCTACTGCAGAGGAAATATTTGCCATTGCCAAGGAGCTG
CTAAGGACAGAAGTTAATGTGGGTTCTCCACACCCCCTGCGGTTAAGACTGATGGGTGTCCGAATGTCTA
CTTTTTCCAGTGAAGATGACAGGAAACACCAACAAAGGAGCATCATTGGTTTCTTACAAGCTGGAAACCA
AGCTTTGTCATCTACTGGGGATAGTCTAGACAAAACTGACAAAACTGAGCTTGCAAAGCCCTTAGAAATG
TCTCATAAGAAGAGTTTCTTTGATAAAAAGCGATCAGAAAGAATCTCCAACTGTCAAGACACATCCAGAT
GTAAAACTGCGGGTCAGCAAGCTTTACAGATCTTGGAACCATCCCAAGCATTAAAGAAGCTGAGCGAGAG
TTTTGAAACATCAGAGAATTCAAATGACTGTCAGACATTTATATGTCCAGTTTGCTTTAGGGAGCAAGAA
GGTGTCAGTCTGGAAGCCTTTAATGAACATGTAGATGAGTGTCTTGATGGACCGTCAACCAGTGAGAACT
CAAAAATATCCTGTTACTCACATGCTTCCTCTGCAGACATTGGTCAGAAGGAAGATGTACACCCCTCTAT
TCCACTGTGTGAGAAACGGGGGCATGAAAATGGAGAGATCACTTTAGTAGATGGTGTAGATCTAACAGGG
ACGGAAGACAGATCATTGAAAGCAGCAAGGATGGACACTCTAGAGAATAATCGCAGCAAAGAGGAATGTC
CTGATATTCCAGACAAGTCTTGTCCTATATCACTGGAAAATGAAACCATCAGTACATTAAGTAGGCAAGA
CTCTGTCCAGCCTTGTACAGATGAGGTAGTAACAGGACGAGCTCTAGTGTGTCCTGTTTGTAACCTAGAA
CAAGAGACTTCTGATCTTACCCTCTTCAACATACATGTGGATATTTGCTTAAATAAAGGTATTATCCAAG
AACTGAGAAATAGTGAAGGTAATTCAGTTAAACAACCCAAAGAAAGCTCGAGAAGTACTGACAGACTTCA
GAAGGCTTCAGGAAGGACCAAAAGGCCAGGAACGAAGACAAAGAGCTCAACTTTGAAGAAAACAAAGCCC
CGAGATCCCAGACACACCCTTGATGGATTTTTTAAATGA

Translation (852 aa):
MDNTKEKDNFKDDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQK
AQITSQQLRKAQLQVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNY
HARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHLQER
QDWPEDKRRYFIKMGNYLKIDTPRQEANELTEYERSISPLLFEDSPPDLQPQGSPFQLNSEEQNNPQIAQ
NSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKDLPI
RKVSGIGKVTEKMLMALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGSTDLARDGERKSMSVERT
FSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKEL
LRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQQRSIIGFLQAGNQALSSTGDSLDKTDKTELAKPLEM
SHKKSFFDKKRSERISNCQDTSRCKTAGQQALQILEPSQALKKLSESFETSENSNDCQTFICPVCFREQE
GVSLEAFNEHVDECLDGPSTSENSKISCYSHASSADIGQKEDVHPSIPLCEKRGHENGEITLVDGVDLTG
TEDRSLKAARMDTLENNRSKEECPDIPDKSCPISLENETISTLSRQDSVQPCTDEVVTGRALVCPVCNLE
QETSDLTLFNIHVDICLNKGIIQELRNSEGNSVKQPKESSRSTDRLQKASGRTKRPGTKTKSSTLKKTKP
RDPRHTLDGFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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