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Report for CCDS26827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26827.1 Public Mus musculus 14 Il3ra 23 108 98 CCDS HistoryNCBI Gene:16188Re-query CCDS DB by CCDS ID:26827.1Re-query CCDS DB by GeneID:16188See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090591.3 ENSMUSP00000088079.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090591.3Link to Ensembl Protein Viewer:ENSMUSP00000088079.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090591Re-query CCDS DB by Protein ID:ENSMUSP00000088079
Original member Current member EBI ENSMUST00000224163.1 ENSMUSP00000153358.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224163.1Link to Ensembl Protein Viewer:ENSMUSP00000153358.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224163Re-query CCDS DB by Protein ID:ENSMUSP00000153358
Original member NCBI NM_008369.1 NP_032395.1 Updated not alive Link to Nucleotide Sequence:NM_008369.1Link to Protein Sequence:NP_032395.1Re-query CCDS DB by Nucleotide ID:NM_008369Re-query CCDS DB by Protein ID:NP_032395
Current member NCBI NM_008369.2 NP_032395.1 Accepted alive Link to Nucleotide Sequence:NM_008369.2Link to Protein Sequence:NP_032395.1Re-query CCDS DB by Nucleotide ID:NM_008369Re-query CCDS DB by Protein ID:NP_032395Link to BLAST:NP_032395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032395.1 396 P26952-1 396 100% 0 0

Chromosomal Locations for CCDS 26827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14347131 14347188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14347914 14348068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14348821 14348944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14349243 14349372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14350035 14350267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14350688 14350806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14350938 14350967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14351050 14351164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14351917 14352019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14355007 14355073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14355370 14355426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCCGCCAACCTGTGGCTCATCCTGGGGCTCCTGGCATCCCACTCTTCAGATCTGGCTGCGGTCCGTG
AGGCTCCACCCACTGCTGTGACCACGCCCATCCAGAACCTGCATATCGACCCCGCCCACTACACACTGAG
CTGGGACCCCGCCCCCGGCGCTGACATCACGACAGGGGCTTTTTGCAGGAAGGGCAGGGACATCTTTGTC
TGGGCTGACCCCGGGCTTGCCCGCTGCTCATTCCAGTCGCTCTCCCTCTGCCATGTGACCAACTTCACCG
TCTTCCTGGGGAAGGACAGGGCTGTGGCAGGATCCATCCAGTTCCCCCCAGATGATGATGGCGACCACGA
GGCCGCAGCCCAGGACCTGCGCTGCTGGGTGCATGAGGGGCAGCTGAGCTGCCAATGGGAGCGGGGTCCG
AAAGCAACGGGTGACGTGCACTACCGGATGTTCTGGCGTGATGTGCGGCTCGGTCCTGCCCACAACCGCG
AGTGTCCACACTACCACAGCCTTGATGTCAACACCGCTGGCCCCGCCCCTCATGGTGGCCATGAAGGCTG
CACCCTTGACCTCGACACTGTCCTTGGCTCCACCCCCAACAGCCCTGACCTTGTCCCCCAGGTCACCATC
ACCGTCAACGGCAGTGGCCGCGCTGGCCCCGTGCCCTGCATGGACAACACTGTGGACCTGCAGCGCGCAG
AGGTCCTGGCCCCGCCCACGTTGACAGTGGAGTGCAACGGCTCTGAGGCCCATGCCCGATGGGTCGCGCG
GAACAGATTCCACCATGGCCTCCTTGGGTACACCCTGCAGGTCAACCAGAGCTCCCGCTCAGAGCCACAG
GAATACAATGTCTCCATCCCCCACTTCTGGGTCCCCAACGCTGGTGCCATCTCCTTCCGGGTCAAGTCGA
GGTCAGAGGTTTACCCTCGGAAGCTCAGCAGCTGGAGCGAAGCCTGGGGCCTCGTCTGCCCCCCAGAGGT
GATGCCTGTGAAGACAGCCTTGGTGACTTCAGTGGCTACGGTGCTGGGGGCAGGGCTCGTGGCAGCTGGG
CTCCTGCTGTGGTGGAGGAAGTCGCTGCTCTACCGCCTGTGCCCACCCATTCCACGCCTGCGCCTGCCCT
TGGCAGGGGAGATGGTCGTGTGGGAACCAGCTCTTGAAGACTGCGAGGTGACGCCTGTGACAGACGCCTG
A

Translation (396 aa):
MAANLWLILGLLASHSSDLAAVREAPPTAVTTPIQNLHIDPAHYTLSWDPAPGADITTGAFCRKGRDIFV
WADPGLARCSFQSLSLCHVTNFTVFLGKDRAVAGSIQFPPDDDGDHEAAAQDLRCWVHEGQLSCQWERGP
KATGDVHYRMFWRDVRLGPAHNRECPHYHSLDVNTAGPAPHGGHEGCTLDLDTVLGSTPNSPDLVPQVTI
TVNGSGRAGPVPCMDNTVDLQRAEVLAPPTLTVECNGSEAHARWVARNRFHHGLLGYTLQVNQSSRSEPQ
EYNVSIPHFWVPNAGAISFRVKSRSEVYPRKLSSWSEAWGLVCPPEVMPVKTALVTSVATVLGAGLVAAG
LLLWWRKSLLYRLCPPIPRLRLPLAGEMVVWEPALEDCEVTPVTDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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