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Report for CCDS26866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26866.1 Public Mus musculus 14 Samd8 23 108 98 CCDS HistoryNCBI Gene:67630Re-query CCDS DB by CCDS ID:26866.1Re-query CCDS DB by GeneID:67630See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26866.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022292.9 ENSMUSP00000022292.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022292.9Link to Ensembl Protein Viewer:ENSMUSP00000022292.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022292Re-query CCDS DB by Protein ID:ENSMUSP00000022292
Original member Current member NCBI NM_026283.3 NP_080559.1 Accepted alive Link to Nucleotide Sequence:NM_026283.3Link to Protein Sequence:NP_080559.1Re-query CCDS DB by Nucleotide ID:NM_026283Re-query CCDS DB by Protein ID:NP_080559Link to BLAST:NP_080559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080559.1 478 Q9DA37 478 100% 0 0

Chromosomal Locations for CCDS 26866.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 21750607 21750780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21774963 21775555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21780086 21780181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21783679 21783796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21792404 21792554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21792937 21793241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGCCCGCTGGTAGCCGAGCCGGCTCCCGCCTGCGCTCCGGCTCCCTCCCCCGGCCTTCGCGTCTGACTC
TCAAGGCGCTGCGCCCCGCCTACGCGCCGAGGACCCCCGACTCCAACGGCGACTTAGACACCGGCTCCGA
GCTGGGTCCCGGCAGCCCGGCTCCCACCGCGGAGGAAGTAGAGAAAGAAATGGCAGGTCCTAGTCAACTC
TGCATTCGCCGCTGGACTACCAAGCATGTGGCTGTGTGGCTGAAGGACGAAGGTTTCTTTGAGTATGTGG
ACATTTTATGCAACAAGCACCGCCTTGATGGAATCACATTGCTCACGCTGACTGAATATGATCTCCGCTC
TCCTCCTCTGGAAATCAAAGTCCTAGGAGACATTAAACGGTTAATGCTCTCAGTCCGAAAATTGCAGAAA
ATACATACTGATGTTTTGGAAGAGATGGGCTACAACAGTGACAGTCCTATGAGTCCCATGACTCCATTCC
TTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACACAGCTGTGATGGGCCCATCCC
TGACTTGAGTTCTGATCAGTACCAGTACATGAATGGCAAAAACAAACATTCTGCTCGAAGACTGGACCCA
GAGTACTGGAAGACCATCCTGAGTTGTGTATATGTTTTTATAGTATTTGGGTTTACGTCTTTCATTATGG
TTATTGTTCATGAGCGTGTGCCTGACATGCAGACCTACCCACCACTCCCAGATATATTCCTAGACAGTGT
TCCTAGGATCCCGTGGGCCTTCTCCATGACCGAAGTGTGTGGCGTGATTCTGTGCTACATTTGGATCCTG
GTTCTTCTTCTTCACAAGCACAGGTCAATCCTTCTGCGAAGGCTCTGTAGTCTGATGGGCACTGTATTCT
TGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACAGCACCTGCAGTGTACTGGAAA
GATATATGGAAGTGTGTGGGAGAAACTACGACGGGCATTTGCCATCTGGAGCGGCTTTGGAATGACTCTG
ACTGGCGTCCACACTTGTGGAGACTACATGTTCAGTGGCCACACAGTTGTTCTAACCATGCTGAATTTCT
TTGTCACAGAGTATACACCAAGAAGCTGGAATTTCTTGCACACTCTATCCTGGGTTCTCAACCTCTTTGG
AATCTTCTTCATCTTGGCTGCCCATGAACATTATTCCATTGATGTGTTTATTGCCTTTTATATCACAACA
AGACTCTTTTTGTACTACCATACTCTGGCTAACACCAGAGCGTATCATCAGAGTAGGAGAGCGAGGATTT
GGTTCCCTATGTTTTCTTTCTTTGAATGCAATGTTAATGGCACAGTACCTAATGAATATTGTTGGCCATT
TTCTAAACCAGCAATAATGAAAAGACTAATTGGATGA

Translation (478 aa):
MPAGSRAGSRLRSGSLPRPSRLTLKALRPAYAPRTPDSNGDLDTGSELGPGSPAPTAEEVEKEMAGPSQL
CIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIKVLGDIKRLMLSVRKLQK
IHTDVLEEMGYNSDSPMSPMTPFLSALQSADWLCNGEPTHSCDGPIPDLSSDQYQYMNGKNKHSARRLDP
EYWKTILSCVYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPRIPWAFSMTEVCGVILCYIWIL
VLLLHKHRSILLRRLCSLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLRRAFAIWSGFGMTL
TGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVFIAFYITT
RLFLYYHTLANTRAYHQSRRARIWFPMFSFFECNVNGTVPNEYCWPFSKPAIMKRLIG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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