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Report for CCDS26884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26884.1 Public Mus musculus 14 Hesx1 23 108 98 CCDS HistoryNCBI Gene:15209Re-query CCDS DB by CCDS ID:26884.1Re-query CCDS DB by GeneID:15209See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035433.9 ENSMUSP00000041999.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035433.9Link to Ensembl Protein Viewer:ENSMUSP00000041999.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035433Re-query CCDS DB by Protein ID:ENSMUSP00000041999
Original member Current member EBI ENSMUST00000224331.1 ENSMUSP00000152952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224331.1Link to Ensembl Protein Viewer:ENSMUSP00000152952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224331Re-query CCDS DB by Protein ID:ENSMUSP00000152952
Original member NCBI NM_010420.2 NP_034550.2 Updated not alive Link to Nucleotide Sequence:NM_010420.2Link to Protein Sequence:NP_034550.2Re-query CCDS DB by Nucleotide ID:NM_010420Re-query CCDS DB by Protein ID:NP_034550
Current member NCBI NM_010420.3 NP_034550.2 Accepted alive Link to Nucleotide Sequence:NM_010420.3Link to Protein Sequence:NP_034550.2Re-query CCDS DB by Nucleotide ID:NM_010420Re-query CCDS DB by Protein ID:NP_034550Link to BLAST:NP_034550.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034550.2 185 Q61658 185 100% 0 0

Chromosomal Locations for CCDS 26884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 27000720 27000876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27001372 27001571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27001819 27001920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27002006 27002104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGTCTCCCAGCCTTCGGGAAGGTGCTCAGCTCCGGGAAAGCAAGCCCGCGCCCTGCTCCTTCTCAATTG
AGAGCATTTTAGGACTGGACCAGAAAAAAGATTGTACAACGTCAGTAAGACCCCACAGACCCTGGACAGA
CACCTGCGGTGACTCAGAGAAAGGTGGCAACCCACCCCTACATGCCCCAGATCTTCCCAGTGAGACTTCA
TTTCCTTGTCCAGTGGATCATCCAAGGCCAGAAGAAAGGGCTCCGAAATATGAAAATTATTTTTCAGCCT
CCGAAACACGCTCTTTGAAAAGAGAATTGAGTTGGTACCGAGGACGAAGGCCAAGAACCGCTTTCACCCA
GAACCAGGTCGAAGTATTGGAAAATGTCTTTAGAGTGAACTGCTACCCTGGCATTGACATCAGAGAGGAC
CTAGCTCAAAAGCTGAACTTAGAGGAAGACAGAATCCAGATTTGGTTCCAAAATCGCCGAGCAAAGATGA
AAAGGTCCCGTAGAGAATCACAGTTTCTAATGGCGAAAAAACCCTTCAACCCAGATCTTCTGAAATAG

Translation (185 aa):
MSPSLREGAQLRESKPAPCSFSIESILGLDQKKDCTTSVRPHRPWTDTCGDSEKGGNPPLHAPDLPSETS
FPCPVDHPRPEERAPKYENYFSASETRSLKRELSWYRGRRPRTAFTQNQVEVLENVFRVNCYPGIDIRED
LAQKLNLEEDRIQIWFQNRRAKMKRSRRESQFLMAKKPFNPDLLK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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