NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26973.1 Public Mus musculus 14 Txndc16 23 108 98 CCDS HistoryNCBI Gene:70561Re-query CCDS DB by CCDS ID:26973.1Re-query CCDS DB by GeneID:70561See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26973.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022377.10 ENSMUSP00000022377.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022377.10Link to Ensembl Protein Viewer:ENSMUSP00000022377.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022377Re-query CCDS DB by Protein ID:ENSMUSP00000022377
Original member Current member NCBI NM_172597.3 NP_766185.1 Accepted alive Link to Nucleotide Sequence:NM_172597.3Link to Protein Sequence:NP_766185.1Re-query CCDS DB by Nucleotide ID:NM_172597Re-query CCDS DB by Protein ID:NP_766185Link to BLAST:NP_766185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766185.1 819 Q7TN22-2 819 100% 0 0

Chromosomal Locations for CCDS 26973.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 45135708 45135970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45140418 45140608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45141973 45142133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45144942 45145080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45147829 45147913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45151338 45151474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45151758 45151926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45161334 45161393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45162240 45162383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45162932 45163055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45165347 45165407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45165727 45165893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45169238 45169388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45172514 45172604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45183046 45183167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45205342 45205416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45206729 45206802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45211156 45211238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45213286 45213448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGATGTCTTCTGGCTTCAGTGTCTTTAGAGCTGGTGTTGCATTGGTTTTGATGTGCAGTTTTTACAAGT
CAACTGAAGACTCTCTCCCAGAACTGACTCCTCAGCAATATTTCAGCACACTGCAGCCAGGAAAAGCCTC
ATTAGTTTATTTCTGCCAAGTTGGTTCTCTAAGTAACTCTGTGTTTCTTGAAGAACTAAAAGAAGCTGTC
AAGCCTCTCCAGGACTATGGGATTTCAGTTGCAAAGGTTACTTGTGTTGAAGAAGAAGCGTCAAGGTACT
GTGGGGAAGAAGAGGGTTTGATGAAAGCGTATTTATTCAGAGGCAACATACTTCTCAGAGAATTCCCCAC
GGACATCTTGTTTGATGTGAACGCCATCATTGCTCATGTTCTCTTTGCTCTGCTTTTTAATGAAGTAAAA
TATATTACCACCCTGGAAGACCTTCACAGCATAGAAAACTCTCTGAAAGGAAAATCAAATATGATATTCT
CATACGTAGAAGCCATCGGAACACCAGAGCATAGAGCAGTCATGGAAGCTGCTTTTGTGTATGGGACCTC
TTACCAGTTTGCCTTAACCACAGAAATTGCTCTTTTAGAAAATATCGGCTCTGAGAGTATAGAACATGCA
CATCTCTACTTTTTTCATTGTAAACTGGTCTTGGACTTGACCGAGCATTGCAGAAGAACACTAATGGAAC
AGCCATTGACCACACTCAATATTCACGTATTTGTGAAGACAATGAACGCACCTCTGTTGATGGAAGTGGC
TGAAGATCCCCAGCAGGTCTCAACCGTTCATCTACAACTAGGATTGCCACTGGTTTTTATTATCAGCCAG
CGCGCTACCCAGGAGGCTGACAGAAGAACTGCGGAGTGGGTGGCGTGGCACCTTCTGGGGAAAGCAGGGG
TTCTGCTCTTGTTGAGGGACTCCATGGATGTTAACATTCCTCAGCACGCTAATGTGGCCTTCAGAAGAGC
AGAGAAGGATGTGCCTGTGGAGTTTCTGGTGTTGAATGATGTTGAGTTAATCATTTCCCACGTGAAAAAT
AATATGCACATTGAAGAAATACAAGAAGATGAAGGCGAAGACATGGAGGGCCCAGATCTGGCTGTTGAAG
ATGATGAGGTGGCAGGAACTGTTTACAGAGATAGGAAGAAACCACTACCTTTGGAGTTGTCTGTGGAGCT
AACAGAGGAGACTTTTAATACAACGGTCATGACTTCTGACAGCATAGTGCTCTTCTATGCTACCTGGCAT
GCAGTATCCATGGCATTTCTACAATCCTATATTGATGTGGCAATTAAGTTGAAAGGCAGGTCCACCATCC
TTCTCACCAGAATAAATTGTGCAGATTGGTCTGATATATGTACGAAGCAAAATGTTACTGCATTTCCCGT
GGTAAAGTTGTATAAGGAAGGCGAGAGCCCAGTGTCTTATGCTGGTATGTTGGCAACTAAAGATCTCCTG
AAATTTATCCAGTTGAATAAGATCTCCTGTCCAGTGAACATAGCATCTATCCAGGAAGCAGAAAAATACC
TGCGTGGGGAATTATATAAAGACCTGCCCAGCTCTGCTAGTGTGTCAGTACTGGGGCTCTTCAGCCCAGC
CATGGCATCAGCAAAAGAACTTTTCAGGGAAGCAGGAAAGCAGCTGAGAGGCTCTGTCATTACGGGAATT
TATTCTGAAGATGATGTGTGGATACTGTCAAATAAATATGCTACAACTCTCCCAGCCCTGCTACTGGCCA
GGCCTAAAGAAGGTAGAATAGAGAGTGTCCCACTAGACACCACCCTGGTACAAGACATGGCTCAGATACT
AGCAAATGCACTACTGGAAGCATTTCCAGAAATCACTGTGGAAAATCTTCCCACATATTTAAGATTTCAG
AGACCGCTACTTCTCTTGTTTAGTGGTGGCAGCATAAACCCTCAGTACAGGAACACGATCCTGGCACTGG
TGAGACAGAAGCAGCTGGATTCGTTTACCCCTTGCTGGTTAAATCTGAAGAACACTCCCGTGGGGAGGGG
CATCTTGAAGGCATATTTTGGCCGTCTGCCACCACTTCCTCAGCTGCTGTTGGTGAATCTGCATTCGGGT
GGCCAAGTGTATGCATTTCCTTCATCCCAGTCTGTGACGGAACAAAGCCTTGTGTTGTGGCTGAAACATT
TACAAGCGGGACTAGAAAATCCCATCATCTTGTCTGCCCAGGAATGGAAACCTCCTCTTCCTGCCTTTGA
TTTTCTGAATATGATGGACGCTCCTACATCCCAAGCTCCCACGAAGAAAGTTCTAGAGTGTCAGAAAGAA
GCAGAGGTGCAGGAGAGTGCTGAGCTGCAGCCTGGAGACAGATCAACAGCCAGGAGAGAGCCGGTCGAAA
TGCTGAGAATAAAGCGCTGGAACACTGCCAACTGGCCCAAAGACACACAGGAGCCTTTTCACCACGACAA
GGAGTTATGA

Translation (819 aa):
MMSSGFSVFRAGVALVLMCSFYKSTEDSLPELTPQQYFSTLQPGKASLVYFCQVGSLSNSVFLEELKEAV
KPLQDYGISVAKVTCVEEEASRYCGEEEGLMKAYLFRGNILLREFPTDILFDVNAIIAHVLFALLFNEVK
YITTLEDLHSIENSLKGKSNMIFSYVEAIGTPEHRAVMEAAFVYGTSYQFALTTEIALLENIGSESIEHA
HLYFFHCKLVLDLTEHCRRTLMEQPLTTLNIHVFVKTMNAPLLMEVAEDPQQVSTVHLQLGLPLVFIISQ
RATQEADRRTAEWVAWHLLGKAGVLLLLRDSMDVNIPQHANVAFRRAEKDVPVEFLVLNDVELIISHVKN
NMHIEEIQEDEGEDMEGPDLAVEDDEVAGTVYRDRKKPLPLELSVELTEETFNTTVMTSDSIVLFYATWH
AVSMAFLQSYIDVAIKLKGRSTILLTRINCADWSDICTKQNVTAFPVVKLYKEGESPVSYAGMLATKDLL
KFIQLNKISCPVNIASIQEAEKYLRGELYKDLPSSASVSVLGLFSPAMASAKELFREAGKQLRGSVITGI
YSEDDVWILSNKYATTLPALLLARPKEGRIESVPLDTTLVQDMAQILANALLEAFPEITVENLPTYLRFQ
RPLLLLFSGGSINPQYRNTILALVRQKQLDSFTPCWLNLKNTPVGRGILKAYFGRLPPLPQLLLVNLHSG
GQVYAFPSSQSVTEQSLVLWLKHLQAGLENPIILSAQEWKPPLPAFDFLNMMDAPTSQAPTKKVLECQKE
AEVQESAELQPGDRSTARREPVEMLRIKRWNTANWPKDTQEPFHHDKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH