NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27015.1 Public Mus musculus 14 Or11g24 23 108 98 CCDS HistoryNCBI Gene:258663Re-query CCDS DB by CCDS ID:27015.1Re-query CCDS DB by GeneID:258663See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075261.3 ENSMUSP00000074740.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075261.3Link to Ensembl Protein Viewer:ENSMUSP00000074740.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075261Re-query CCDS DB by Protein ID:ENSMUSP00000074740
Original member Current member EBI ENSMUST00000216949.1 ENSMUSP00000150559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216949.1Link to Ensembl Protein Viewer:ENSMUSP00000150559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216949Re-query CCDS DB by Protein ID:ENSMUSP00000150559
Original member Current member NCBI NM_146668.2 NP_666879.2 Accepted alive Link to Nucleotide Sequence:NM_146668.2Link to Protein Sequence:NP_666879.2Re-query CCDS DB by Nucleotide ID:NM_146668Re-query CCDS DB by Protein ID:NP_666879Link to BLAST:NP_666879.2

Chromosomal Locations for CCDS 27015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50424521 50425450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAAAACCCTCAGCAGCTCCAACAACACCATCACTGGCTTCATCCTCTTGGGCTTCCCCTGCCCCAGGG
AGGGGCAAATCCTCCTCTTTGTGCTCTTCTTCATTGTCTACCTCCTTACCCTCATGGGCAATGCTTCCAT
CATATGTGCTGTGTGCTGTGATCAGAAACTTCACACCCCCATGTACCTCCTGCTGGCCAACTTCTCCTTC
CTGGAAATCTGTTATGTCACCTCCACAGTCCCCAACATGTTGGCCAACTTCCTCTCTGAAAACAAGGTCA
TTTCCTTCGCTGGATGCTTCCTGCAGTTCTATTTCTTCTTCTCCTTGGGTTCTACAGAATGCTTTTTCCT
GGCAGTCATGGCATTTGATCGATACCTTGCCATCTGTAGGCCACTACATTATCCTGCTCTCATGACTGGG
CACCTCTGCAACATCCTTGTGATCAGTTGCTGGGTGCTTGGTTTCCTCTGGTTCCCTGTTCCCATCATCA
TCATCTCCCAGATGTCCTTCTGTGGATCCAGAATTATAGACCACTTCCTGTGTGACCCAGGCCCTCTGTT
GGCCCTCACCTGTTCCAGAGCCCCATTGATGGAGGTTTTCTGGGCAATTTTAGGTTCTATGCTCCTGTTT
ATTCCTTTTTTCTGCATCATGGGATCTTATATATTGGTCCTAAGAGCTGTGTTCAGAGTTCCTTCAAGAG
ATGGACAAAAAAAGGCTTTCTCCACTTGCGGATCTCATCTCACAGTAGTTTCACTATTTTATGGCTCAGT
GATGATAATGTATCTGAGCCCAACATCTGAGCATGAAGCTGGAATGCAGAAGCTTGTAACTCTATTTTAT
TCTGTGGTTACTCCACTCATTAATCCTGTGATATACAGTCTGAGGAACAAAGATATGAAAAATGCCCTGC
AGAAGATTTTAAAAACATAA

Translation (309 aa):
MKTLSSSNNTITGFILLGFPCPREGQILLFVLFFIVYLLTLMGNASIICAVCCDQKLHTPMYLLLANFSF
LEICYVTSTVPNMLANFLSENKVISFAGCFLQFYFFFSLGSTECFFLAVMAFDRYLAICRPLHYPALMTG
HLCNILVISCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALTCSRAPLMEVFWAILGSMLLF
IPFFCIMGSYILVLRAVFRVPSRDGQKKAFSTCGSHLTVVSLFYGSVMIMYLSPTSEHEAGMQKLVTLFY
SVVTPLINPVIYSLRNKDMKNALQKILKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH