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Report for CCDS27049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27049.1 Public Mus musculus 14 Tmem253 23 108 98 CCDS HistoryNCBI Gene:619301Re-query CCDS DB by CCDS ID:27049.1Re-query CCDS DB by GeneID:619301See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100638.3 ENSMUSP00000098203.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100638.3Link to Ensembl Protein Viewer:ENSMUSP00000098203.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100638Re-query CCDS DB by Protein ID:ENSMUSP00000098203
Original member Current member NCBI NM_001033805.3 NP_001028977.1 Accepted alive Link to Nucleotide Sequence:NM_001033805.3Link to Protein Sequence:NP_001028977.1Re-query CCDS DB by Nucleotide ID:NM_001033805Re-query CCDS DB by Protein ID:NP_001028977Link to BLAST:NP_001028977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028977.1 204 Q3UNB8 204 100% 0 0

Chromosomal Locations for CCDS 27049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52017090 52017197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52017751 52017861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52017954 52018010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52018542 52018652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52018732 52018878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52019206 52019286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGATCAAAATGCTAATCAGCCAAGACAGGAGAGACCCAGCGTTCGCCTGGAAAAGCTACAGCACTGGG
CAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGCCAAGTGTGGCTGGCAATAGCTATGGT
CCCCTTTACTATCTCAGTTTCCTGCTTGACCTCTGCCTGTCACCTGGTCACAGCACTGCCACTTTGGCCC
GGAGCCTCGGGCCTCCTCACTGGCATTATCACCCTTGAACTCCGAAGAGCACCTTGCATCTGGAAGGTGC
GGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGTGATAGAGGTGATGAA
GACAGCCTTGGGAACTGCCTCTATGGACTCCTCCCAGTCGACAGGGTTGCTGGTGCTGGAGCTGAGCGCG
GAGGCCTTCACCCTAGCGGGAGTGCTGGTCTCCACATATGCCCTGTTCTTGCTGAGCCAGAGGAAGCCTG
GATACTTCAAGAGGTCAAGGCTGCAGTACCGGGAGCTACAGGAGGGCCTCTCTGAGATGGAGGAGGTTTC
TGGTTTGGAGAATGGTCCCGTGGTGGCTAGCACAGGAAATAGGACGGATGAGTGA

Translation (204 aa):
MDQNANQPRQERPSVRLEKLQHWARHKQSGRLLVLAVSQVWLAIAMVPFTISVSCLTSACHLVTALPLWP
GASGLLTGIITLELRRAPCIWKVRAMMISNTFNLILGFVAVVIEVMKTALGTASMDSSQSTGLLVLELSA
EAFTLAGVLVSTYALFLLSQRKPGYFKRSRLQYRELQEGLSEMEEVSGLENGPVVASTGNRTDE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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