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Report for CCDS27135.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27135.2 Public Mus musculus 14 Cma1 23 108 98 CCDS HistoryNCBI Gene:17228Re-query CCDS DB by CCDS ID:27135.2Re-query CCDS DB by GeneID:17228See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27135.1
The coding region has been updated to start at an alternate in-frame start codon that is more supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27135.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226280.1 ENSMUSP00000154406.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226280.1Link to Ensembl Protein Viewer:ENSMUSP00000154406.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226280Re-query CCDS DB by Protein ID:ENSMUSP00000154406
Original member Current member NCBI NM_010780.3 NP_034910.2 Accepted alive Link to Nucleotide Sequence:NM_010780.3Link to Protein Sequence:NP_034910.2Re-query CCDS DB by Nucleotide ID:NM_010780Re-query CCDS DB by Protein ID:NP_034910Link to BLAST:NP_034910.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034910.2 247 P21844 247 100% 0 0

Chromosomal Locations for CCDS 27135.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55941654 55941797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55942126 55942380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55942563 55942698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55943699 55943849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55944475 55944532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCATCTTCTTACTCTTCATCTGCTGCTCCTTCTCCTGGGTTCCAGCACCAAAGCTGGAGAGATCATTG
GAGGCACGGAGTGCATACCACACTCCCGCCCCTACATGGCCTATCTGGAAATTGTCACTTCTGAGAACTA
CCTGTCGGCCTGCAGTGGCTTCCTGATAAGAAGAAACTTTGTGCTGACTGCAGCTCACTGTGCGGGAAGG
TCTATAACAGTCCTCCTAGGAGCCCATAACAAAACATCTAAAGAAGACACGTGGCAGAAGCTTGAGGTGG
AAAAGCAATTCCTTCATCCAAAATATGATGAGAATTTGGTTGTCCACGACATCATGCTACTGAAGTTGAA
GGAGAAAGCCAAGCTAACCCTAGGTGTGGGAACCCTCCCACTCTCTGCCAACTTCAACTTTATCCCACCC
GGGAGAATGTGCAGGGCAGTTGGCTGGGGCAGAACAAACGTGAATGAGCCAGCCTCCGACACACTGCAGG
AAGTAAAGATGAGACTCCAGGAGCCCCAAGCCTGCAAACACTTCACCAGTTTTCGACACAATTCCCAGCT
GTGTGTGGGCAACCCCAAGAAGATGCAAAATGTATACAAGGGAGACTCTGGAGGACCTCTGCTGTGTGCT
GGGATAGCCCAAGGCATTGCATCCTATGTACATCGGAATGCAAAGCCCCCTGCTGTCTTTACCAGAATCT
CCCATTACAGGCCCTGGATCAATAAGATCTTGAGGGAGAATTAA

Translation (247 aa):
MHLLTLHLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAGR
SITVLLGAHNKTSKEDTWQKLEVEKQFLHPKYDENLVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPP
GRMCRAVGWGRTNVNEPASDTLQEVKMRLQEPQACKHFTSFRHNSQLCVGNPKKMQNVYKGDSGGPLLCA
GIAQGIASYVHRNAKPPAVFTRISHYRPWINKILREN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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