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Report for CCDS27139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27139.1 Public Mus musculus 14 Mcpt2 23 108 98 CCDS HistoryNCBI Gene:17225Re-query CCDS DB by CCDS ID:27139.1Re-query CCDS DB by GeneID:17225See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015576.5 ENSMUSP00000015576.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015576.5Link to Ensembl Protein Viewer:ENSMUSP00000015576.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000015576Re-query CCDS DB by Protein ID:ENSMUSP00000015576
Original member NCBI NM_008571.1 NP_032597.1 Updated not alive Link to Nucleotide Sequence:NM_008571.1Link to Protein Sequence:NP_032597.1Re-query CCDS DB by Nucleotide ID:NM_008571Re-query CCDS DB by Protein ID:NP_032597
Current member NCBI NM_008571.2 NP_032597.1 Accepted alive Link to Nucleotide Sequence:NM_008571.2Link to Protein Sequence:NP_032597.1Re-query CCDS DB by Nucleotide ID:NM_008571Re-query CCDS DB by Protein ID:NP_032597Link to BLAST:NP_032597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032597.1 244 P15119 244 100% 0 0

Chromosomal Locations for CCDS 27139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56042154 56042208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56042701 56042851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56043363 56043498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56043683 56043937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56044292 56044429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGCAGGCCCTACTATTCCTGATGGCACTTCTTTTGCCTTCTGGAGCTGGAGCTGAGGAGATTATTGGTG
GTGTTGAGGCTAAACCACACTCCCGTCCTTACATGGCCTATCTGAAGTTCACCACTAAGAACGGTTCGAA
GGAGAGGTGTGGTGGGTTTCTCATAGCCCCACAATTTGTGATGACTGCTGCACACTGTAATGGAAGTGAA
ATCAGTGTCATCCTTGGAGCTCATAATATAAACAAGAACGAACCCACACAGCAGATAATAAAAACTGAAA
AAACATTTGTTCACCCAAAGTTTCAGTACCTTTCGGGTTTCTATGACATCATGTTACTGAAGCTACAAAA
GAAAGCAGAGTTGAATTCTGATGTGGATGTAATTTCATTGCCTAGTTCCTCTGACTTCATCAAGCCTGGG
AAGATGTGCTGGACAGCTGGATGGGGGAAAACAGGAAAGAATAACCCTCTATCAGTTACCCTGAGAGAGG
TTGAACTGAGAATCATGGATCAAGAGGCCTGTAAAGACCACAGTGATTACGATTATCAACTCCAGGTTTG
CGCAGGCAGTCCCACAACATCAAAATCAATAGGACAAGGAGATTCTGGGGGACCTCTAGTGTGTGATAGT
GTGGCCCATGGTATTGCATCTTCTTATGAAGCAAAGGCCCCTGCAGTCTTCACCCGAATCTCCTATTACC
TGCCCTGGATATATAAAGTCTTAAAGAGCAAGTAG

Translation (244 aa):
MQALLFLMALLLPSGAGAEEIIGGVEAKPHSRPYMAYLKFTTKNGSKERCGGFLIAPQFVMTAAHCNGSE
ISVILGAHNINKNEPTQQIIKTEKTFVHPKFQYLSGFYDIMLLKLQKKAELNSDVDVISLPSSSDFIKPG
KMCWTAGWGKTGKNNPLSVTLREVELRIMDQEACKDHSDYDYQLQVCAGSPTTSKSIGQGDSGGPLVCDS
VAHGIASSYEAKAPAVFTRISYYLPWIYKVLKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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