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Report for CCDS27159.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27159.2 Public Mus musculus 14 Sap18 23 108 98 CCDS HistoryNCBI Gene:20220Re-query CCDS DB by CCDS ID:27159.2Re-query CCDS DB by GeneID:20220See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27159.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27159.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000128764.8 ENSMUSP00000120071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128764.8Link to Ensembl Protein Viewer:ENSMUSP00000120071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128764Re-query CCDS DB by Protein ID:ENSMUSP00000120071
Original member Current member NCBI NM_009119.3 NP_033145.2 Accepted alive Link to Nucleotide Sequence:NM_009119.3Link to Protein Sequence:NP_033145.2Re-query CCDS DB by Nucleotide ID:NM_009119Re-query CCDS DB by Protein ID:NP_033145Link to BLAST:NP_033145.2

Chromosomal Locations for CCDS 27159.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 57798226 57798354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57798488 57798597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57801494 57801616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57801922 57802078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCTCGCCGCAGGGGTCGGAGGTCAGGGCGAGCGTCTCCCGGGCCGAAGGAGGAAGATGGCGGTGGAGT
CGCGCGTTACCCAGGAGGAAATTAAGAAGGAGCCGGAGAAGCCGATCGACCGCGAGAAGACCTGCCCGCT
CCTGCTGCGGGTCTTCACCACCAACAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGCGGGAACGTG
CCTTCGAGCGAGCTGCAGATCTACACCTGGATGGATGCAACCTTGAAAGAACTGACTAGTTTAGTGAAGG
AAGTCTACCCAGAAGCCAGAAAGAAGGGCACACACTTCAATTTTGCAATTGTTTTTATGGATCTTAAAAG
ACCTGGATATCGAGTTAAGGAGATTGGCAGCACCATGTCTGGCAGGAAGGGCACTGATGACTCCATGACC
CTGCAGTCACAGAAGTTCCAAATAGGGGATTATCTGGACATAGCCATCACGCCTCCAAATCGGGCGCCGC
CTTCGTCAGGGAGGATGAGACCCTACTGA

Translation (172 aa):
MLAAGVGGQGERLPGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNV
PSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMT
LQSQKFQIGDYLDIAITPPNRAPPSSGRMRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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