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Report for CCDS27325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27325.1 Public Mus musculus 14 Slitrk1 23 108 98 CCDS HistoryNCBI Gene:76965Re-query CCDS DB by CCDS ID:27325.1Re-query CCDS DB by GeneID:76965See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100322.3 ENSMUSP00000097897.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100322.3Link to Ensembl Protein Viewer:ENSMUSP00000097897.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100322Re-query CCDS DB by Protein ID:ENSMUSP00000097897
Original member Current member NCBI NM_199065.2 NP_951020.1 Accepted alive Link to Nucleotide Sequence:NM_199065.2Link to Protein Sequence:NP_951020.1Re-query CCDS DB by Nucleotide ID:NM_199065Re-query CCDS DB by Protein ID:NP_951020Link to BLAST:NP_951020.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_951020.1 696 Q810C1 696 100% 0 0

Chromosomal Locations for CCDS 27325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 108911187 108913277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGCTGCTTTGGATTCTGTTGCTGGAGACGTCTCTTTGTTTTGCCGCTGGAAACGTTACAGGGGACGTTT
GTAAAGAGAAGATCTGTTCTTGCAATGAGATAGAAGGGGACTTACACGTAGACTGTGAAAAAAAGGGCTT
CACAAGTCTGCAGCGCTTCACCGCCCCGACTTCCCAGTTTTACCATTTATTTCTGCATGGCAATTCCCTC
ACTCGACTTTTCCCTAATGAGTTCGCTAACTTTTATAATGCGGTTAGTTTGCATATGGAAAACAATGGCT
TGCATGAGATCGTTCCGGGGGCATTTCTGGGGCTGCAGCTGGTGAAACGGCTGCACATCAACAACAACAA
GATCAAGTCTTTTCGAAAGCAGACTTTTTTGGGGCTGGACGATCTGGAATACCTCCAGGCTGATTTTAAT
TTATTACGGGATATAGACCCGGGGGCCTTCCAGGACTTGAACAAGTTGGAAGTCCTCATTTTAAACGACA
ATCTCATCAGCACCCTACCTGCTAATGTATTCCAGTATGTGCCCATCACCCACCTCGACCTCCGTGGAAA
CAGGCTGAAAACACTGCCCTATGAGGAGGTCTTGGAGCAGATCCCTGGCATTGCCGAGATCCTGCTAGAG
GATAACCCTTGGGACTGCACCTGTGATCTGCTCTCCCTGAAGGAATGGCTAGAGAACATTCCCAAAAACG
CCCTAATCGGTCGAGTGGTCTGCGAAGCCCCCACCAGGCTCCAGGGTAAAGACCTCAATGAAACCACGGA
ACAGGACCTGTGTCCTTTAAAAAACAGAGTGGATTCTAGTCTCCCGGCTCCCCCTGCCCAGGAAGAAACC
TTCGCTCCTGGCCCCCTGCCAACTCCTTTCAAGACAAATGGGCAGGATGAGCATGCTACCCCAGGGGCTG
TTCCAAATGGAGGTACAAAGATCCCGGGCAACTGGCAGCTCAAAATCAAACCCACGCCACCGATAGCAAC
TGGGAGCGCCAGAAACAAACCCCCAGTGCATGGCTTGCCCTGCCCCGGGGGCTGCAGCTGTGACCACATC
CCAGGCTCAGGCTTAAAGATGAACTGTAACAACCGGAACGTGAGCAGCTTGGCTGATTTGAAGCCTAAGC
TTTCCAACGTGCAGGAGCTTTTCCTTCGAGATAACAAGATCCATAGCATCCGAAAATCACACTTTGTGGA
TTACAAGAACCTCATTCTGTTGGATCTGGGCAACAACAACATCGCAAACATAGAGAACAACACTTTCAAG
AACCTTTTGGACCTCAGGTGGCTCTACATGGATAGTAACTACCTGGACACTCTGTCCCGGGAGAAATTTG
CTGGGCTGCAGAACCTGGAGTATCTGAATGTGGAGTACAACGCGATTCAGCTCATTCTCCCTGGTACTTT
CAATGCCATGCCGAAACTGAGGATTCTTATTCTCAACAACAACTTGCTGAGGTCCCTACCGGTGGACGTC
TTTGCTGGGGTCTCCCTGTCTAAGCTCAGTCTGCACAATAATTACTTCATGTACCTCCCTGTGGCAGGGG
TGCTGGACCAGTTAACCTCCATCATCCAGATAGACCTGCATGGCAACCCCTGGGAGTGCTCCTGCACCAT
TGTGCCTTTCAAGCAATGGGCAGAACGTCTGGGCTCCGAGGTGCTGATGAGCGACCTCAAGTGTGAGACA
CCGGTGAACTTCTTTAGGAAGGATTTCATGCTGCTCTCCAATGAGGAGATCTGCCCCCAGCTGTATGCGA
GGATCTCGCCCACGTTAACTTCGCACAGTAAAAACAGCACTGGGTTGGCGGAGACCGGGACACACTCCAA
CTCCTACCTAGACACCAGCAGGGTGTCCATCTCCGTGTTGGTCCCGGGACTGCTGCTGGTGTTCGTCACC
TCCGCCTTCACCGTGGTGGGCATGCTCGTGTTTATCCTGAGGAACCGAAAGCGGTCCAAGAGAAGGGATG
CCAATTCCTCTGCGTCCGAAATTAATTCCCTACAGACAGTCTGTGACTCTTCCTACTGGCACAATGGGCC
TTACAATGCAGATGGGTCCCATAGGGTGTATGACTGTGGCTCTCACTCACTTTCAGACTAA

Translation (696 aa):
MLLWILLLETSLCFAAGNVTGDVCKEKICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFYHLFLHGNSL
TRLFPNEFANFYNAVSLHMENNGLHEIVPGAFLGLQLVKRLHINNNKIKSFRKQTFLGLDDLEYLQADFN
LLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPITHLDLRGNRLKTLPYEEVLEQIPGIAEILLE
DNPWDCTCDLLSLKEWLENIPKNALIGRVVCEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPAQEET
FAPGPLPTPFKTNGQDEHATPGAVPNGGTKIPGNWQLKIKPTPPIATGSARNKPPVHGLPCPGGCSCDHI
PGSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDNKIHSIRKSHFVDYKNLILLDLGNNNIANIENNTFK
NLLDLRWLYMDSNYLDTLSREKFAGLQNLEYLNVEYNAIQLILPGTFNAMPKLRILILNNNLLRSLPVDV
FAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPFKQWAERLGSEVLMSDLKCET
PVNFFRKDFMLLSNEEICPQLYARISPTLTSHSKNSTGLAETGTHSNSYLDTSRVSISVLVPGLLLVFVT
SAFTVVGMLVFILRNRKRSKRRDANSSASEINSLQTVCDSSYWHNGPYNADGSHRVYDCGSHSLSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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