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Report for CCDS27435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27435.1 Public Mus musculus 15 Ncald 23 108 98 CCDS HistoryNCBI Gene:52589Re-query CCDS DB by CCDS ID:27435.1Re-query CCDS DB by GeneID:52589See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090150.10 ENSMUSP00000087611.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090150.10Link to Ensembl Protein Viewer:ENSMUSP00000087611.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090150Re-query CCDS DB by Protein ID:ENSMUSP00000087611
Original member Current member EBI ENSMUST00000116445.8 ENSMUSP00000112146.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116445.8Link to Ensembl Protein Viewer:ENSMUSP00000112146.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116445Re-query CCDS DB by Protein ID:ENSMUSP00000112146
Original member Current member EBI ENSMUST00000120746.7 ENSMUSP00000112898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120746.7Link to Ensembl Protein Viewer:ENSMUSP00000112898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120746Re-query CCDS DB by Protein ID:ENSMUSP00000112898
Original member Current member EBI ENSMUST00000119730.7 ENSMUSP00000113858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119730.7Link to Ensembl Protein Viewer:ENSMUSP00000113858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119730Re-query CCDS DB by Protein ID:ENSMUSP00000113858
Original member Current member EBI ENSMUST00000168992.7 ENSMUSP00000130126.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168992.7Link to Ensembl Protein Viewer:ENSMUSP00000130126.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168992Re-query CCDS DB by Protein ID:ENSMUSP00000130126
Original member Current member NCBI NM_001170866.1 NP_001164337.1 Accepted alive Link to Nucleotide Sequence:NM_001170866.1Link to Protein Sequence:NP_001164337.1Re-query CCDS DB by Nucleotide ID:NM_001170866Re-query CCDS DB by Protein ID:NP_001164337Link to BLAST:NP_001164337.1
Original member Current member NCBI NM_001170867.1 NP_001164338.1 Accepted alive Link to Nucleotide Sequence:NM_001170867.1Link to Protein Sequence:NP_001164338.1Re-query CCDS DB by Nucleotide ID:NM_001170867Re-query CCDS DB by Protein ID:NP_001164338Link to BLAST:NP_001164338.1
Original member Current member NCBI NM_001170868.1 NP_001164339.1 Accepted alive Link to Nucleotide Sequence:NM_001170868.1Link to Protein Sequence:NP_001164339.1Re-query CCDS DB by Nucleotide ID:NM_001170868Re-query CCDS DB by Protein ID:NP_001164339Link to BLAST:NP_001164339.1
Original member Current member NCBI NM_001359839.1 NP_001346768.1 Accepted alive Link to Nucleotide Sequence:NM_001359839.1Link to Protein Sequence:NP_001346768.1Re-query CCDS DB by Nucleotide ID:NM_001359839Re-query CCDS DB by Protein ID:NP_001346768Link to BLAST:NP_001346768.1
Original member Current member NCBI NM_001359840.1 NP_001346769.1 Accepted alive Link to Nucleotide Sequence:NM_001359840.1Link to Protein Sequence:NP_001346769.1Re-query CCDS DB by Nucleotide ID:NM_001359840Re-query CCDS DB by Protein ID:NP_001346769Link to BLAST:NP_001346769.1
Original member Current member NCBI NM_001359841.1 NP_001346770.1 Accepted alive Link to Nucleotide Sequence:NM_001359841.1Link to Protein Sequence:NP_001346770.1Re-query CCDS DB by Nucleotide ID:NM_001359841Re-query CCDS DB by Protein ID:NP_001346770Link to BLAST:NP_001346770.1
Original member Current member NCBI NM_001359842.1 NP_001346771.1 Accepted alive Link to Nucleotide Sequence:NM_001359842.1Link to Protein Sequence:NP_001346771.1Re-query CCDS DB by Nucleotide ID:NM_001359842Re-query CCDS DB by Protein ID:NP_001346771Link to BLAST:NP_001346771.1
Original member Current member NCBI NM_001359843.1 NP_001346772.1 Accepted alive Link to Nucleotide Sequence:NM_001359843.1Link to Protein Sequence:NP_001346772.1Re-query CCDS DB by Nucleotide ID:NM_001359843Re-query CCDS DB by Protein ID:NP_001346772Link to BLAST:NP_001346772.1
Original member Current member NCBI NM_001359844.1 NP_001346773.1 Accepted alive Link to Nucleotide Sequence:NM_001359844.1Link to Protein Sequence:NP_001346773.1Re-query CCDS DB by Nucleotide ID:NM_001359844Re-query CCDS DB by Protein ID:NP_001346773Link to BLAST:NP_001346773.1
Original member Current member NCBI NM_001359845.1 NP_001346774.1 Accepted alive Link to Nucleotide Sequence:NM_001359845.1Link to Protein Sequence:NP_001346774.1Re-query CCDS DB by Nucleotide ID:NM_001359845Re-query CCDS DB by Protein ID:NP_001346774Link to BLAST:NP_001346774.1
Original member Current member NCBI NM_134094.4 NP_598855.2 Accepted alive Link to Nucleotide Sequence:NM_134094.4Link to Protein Sequence:NP_598855.2Re-query CCDS DB by Nucleotide ID:NM_134094Re-query CCDS DB by Protein ID:NP_598855Link to BLAST:NP_598855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164337.1 193 Q91X97 193 100% 0 0
NP_001164338.1 193 Q91X97 193 100% 0 0
NP_001164339.1 193 Q91X97 193 100% 0 0
NP_001346768.1 193 Q91X97 193 100% 0 0
NP_001346769.1 193 Q91X97 193 100% 0 0
NP_001346770.1 193 Q91X97 193 100% 0 0
NP_001346771.1 193 Q91X97 193 100% 0 0
NP_001346772.1 193 Q91X97 193 100% 0 0
NP_001346773.1 193 Q91X97 193 100% 0 0
NP_001346774.1 193 Q91X97 193 100% 0 0
NP_598855.2 193 Q91X97 193 100% 0 0

Chromosomal Locations for CCDS 27435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 37368828 37368925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37372116 37372221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37397057 37397434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGGGAAACAGAACAGCAAGCTGCGCCCTGAAGTCATGCAGGACTTACTGGAAAGCACAGACTTCACAG
AGCACGAGATCCAGGAGTGGTACAAAGGCTTCTTGAGAGACTGCCCCAGCGGACATTTATCAATGGAAGA
GTTTAAGAAAATATATGGGAACTTTTTCCCTTACGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGC
ACCTTCGATGCAAACGGTGATGGGACAATAGACTTTAGAGAGTTCATCATAGCCCTGAGTGTGACATCAA
GGGGCAAGCTGGAGCAGAAGCTGAAGTGGGCCTTCAGCATGTATGACCTGGATGGCAATGGCTACATCAG
CAAGGCAGAAATGCTGGAGATTGTACAGGCGATCTACAAAATGGTTTCCTCTGTCATGAAAATGCCTGAA
GATGAATCAACCCCAGAGAAAAGGACAGAAAAGATCTTCCGCCAGATGGATACCAATAGAGATGGAAAGC
TCTCCCTGGAAGAATTCATCCGAGGGGCCAAAAGCGACCCATCCATTGTGCGTCTCCTGCAGTGTGACCC
CAGCAGTGCCGGCCAGTTCTGA

Translation (193 aa):
MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFR
TFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPE
DESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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