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Report for CCDS27461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27461.1 Public Mus musculus 15 Eif3h 23 108 98 CCDS HistoryNCBI Gene:68135Re-query CCDS DB by CCDS ID:27461.1Re-query CCDS DB by GeneID:68135See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022925.9 ENSMUSP00000022925.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022925.9Link to Ensembl Protein Viewer:ENSMUSP00000022925.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022925Re-query CCDS DB by Protein ID:ENSMUSP00000022925
Original member NCBI NM_080635.1 NP_542366.1 Updated not alive Link to Nucleotide Sequence:NM_080635.1Link to Protein Sequence:NP_542366.1Re-query CCDS DB by Nucleotide ID:NM_080635Re-query CCDS DB by Protein ID:NP_542366
Current member NCBI NM_080635.2 NP_542366.1 Accepted alive Link to Nucleotide Sequence:NM_080635.2Link to Protein Sequence:NP_542366.1Re-query CCDS DB by Nucleotide ID:NM_080635Re-query CCDS DB by Protein ID:NP_542366Link to BLAST:NP_542366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542366.1 352 Q91WK2 352 100% 0 0

Chromosomal Locations for CCDS 27461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 51786728 51786825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51787906 51788038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51789993 51790113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51796388 51796537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51797613 51797712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51799192 51799359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51842468 51842624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51865326 51865457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGCGTCGCGCAAGGAAGGCACCGGCTCTACCGCCACCTCCTCCGGTTCTGCTGGCGGCGCGGTGGGGA
AGGGCAAAGGCAAAGGCGGCTCCGGAGATTCGGCCGTGAAGCAGGTGCAGATCGACGGCCTGGTAGTATT
AAAGATAATCAAACATTATCAAGAAGAAGGACAAGGCACTGAGGTTGTTCAGGGCGTGCTCCTGGGTCTG
GTTGTGGAAGACCGGCTAGAGATTACCAACTGCTTCCCGTTCCCCCAGCACACGGAGGATGATGCTGACT
TTGATGAGGTACAGTATCAGATGGAGATGATGCGCAGCCTTCGCCATGTCAACATTGATCACCTCCACGT
GGGCTGGTATCAGTCCACATATTACGGCTCCTTCGTTACCCGGGCGCTTCTGGATTCTCAGTTCAGCTAC
CAGCACGCCATTGAAGAGTCTGTCGTCCTCATTTATGATCCCATAAAAACTGCCCAAGGATCTCTCTCGC
TGAAGGCGTACAGACTGACTCCTAAACTGATGGAAGTTTGTAAAGAGAAGGACTTTTCCCCTGAAGCATT
GAAAAAGGCAAGCATCACCTTTGAGCACATGTTTGAAGAAGTGCCGATTGTAATTAAAAACTCACATCTG
ATCAATGTCCTTATGTGGGAACTTGAGAAGAAGTCAGCTGTGGCGGATAAGCACGAATTGCTCAGTCTTG
CTAGCAGCAATCATCTGGGGAAGAGCCTCCAGCTGCTGATGGACCGGGTGGACGAAATGAGCCAGGACAT
AATCAAATACAACACGTACATGCGCAACACCAGTAAGCAGCAGCAGCAGAAACATCAGTATCAGCAGCGT
CGCCAACAGGAGAATATGCAGCGACAGAGTCGAGGCGAGCCCCCACTCCCTGAGGAGGACCTCTCTAAAC
TCTTCAAGCCCCACCAGGCCCCTGCCAGGATGGATTCACTGCTCATTGCAGGCCAGATTAACACTTACTG
CCAGAACATCAAGGAGTTCACTGCCCAAAACTTAGGCAAACTCTTCATGGCCCAGGCTCTTCAAGAATAC
AATAATTAA

Translation (352 aa):
MASRKEGTGSTATSSGSAGGAVGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGL
VVEDRLEITNCFPFPQHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSY
QHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKASITFEHMFEEVPIVIKNSHL
INVLMWELEKKSAVADKHELLSLASSNHLGKSLQLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKHQYQQR
RQQENMQRQSRGEPPLPEEDLSKLFKPHQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEY
NN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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