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Report for CCDS27463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27463.1 Public Mus musculus 15 Rad21 23 108 98 CCDS HistoryNCBI Gene:19357Re-query CCDS DB by CCDS ID:27463.1Re-query CCDS DB by GeneID:19357See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022927.10 ENSMUSP00000022927.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022927.10Link to Ensembl Protein Viewer:ENSMUSP00000022927.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000022927Re-query CCDS DB by Protein ID:ENSMUSP00000022927
Original member NCBI NM_009009.4 NP_033035.3 Updated not alive Link to Nucleotide Sequence:NM_009009.4Link to Protein Sequence:NP_033035.3Re-query CCDS DB by Nucleotide ID:NM_009009Re-query CCDS DB by Protein ID:NP_033035
Current member NCBI NM_009009.5 NP_033035.3 Accepted alive Link to Nucleotide Sequence:NM_009009.5Link to Protein Sequence:NP_033035.3Re-query CCDS DB by Nucleotide ID:NM_009009Re-query CCDS DB by Protein ID:NP_033035Link to BLAST:NP_033035.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033035.3 635 Q61550 635 100% 0 0

Chromosomal Locations for CCDS 27463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 51964056 51964247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51964955 51965038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51966582 51966731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51967788 51967936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51968351 51968522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51969921 51970144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51971746 51971868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51972202 51972327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51973086 51973292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51973837 51973943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51976099 51976198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51978045 51978174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51982529 51982672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGTTCTACGCACATTTTGTCCTCAGTAAACGAGGGCCTCTGGCCAAAATCTGGCTGGCGGCCCATTGGG
ACAAGAAGCTAACCAAAGCCCATGTATTTGAGTGCAACTTAGAGAGCAGTGTGGAGAGCATCATCTCACC
AAAGGTGAAGATGGCGCTGCGGACGTCAGGACACCTTCTCCTGGGAGTAGTCCGCATCTATCACAGGAAA
GCCAAATACCTCCTCGCAGACTGTAATGAAGCATTTATTAAAATAAAGATGGCGTTTCGGCCAGGTGTTG
TCGATCTACCTGAGGAAAATCGGGAAGCAGCTTATAATGCCATTACTTTACCTGAGGAATTCCACGATTT
TGATCAGCCACTGCCAGATTTAGATGATATTGACGTCGCCCAGCAGTTCAGCCTGAACCAAAGCAGAGTA
GAAGAGATAACCATGAGAGAAGAAGTCGGAAACATCAGTATCCTACAGGAAAATGACTTTGGTGACTTCG
GAATGGATGACCGTGAAATAATGAGAGAAGGCAGTGCTTTCGAGGATGACGACATGTTAGTGAGCACCAG
CGCTTCCAACCTTCTCCTCGAGCCAGAGCAGAGCACCAGCAACCTGAATGAAAAGATGAATCACTTAGAG
TACGAAGACCAGTACAAAGATGACAATTTTGGAGAAGGAAATGATGGCGGTATATTAGATGACAAACTTA
TAAGTAATAATGATGGTGGCATCTTTGACGATCCCCCTGCCTTGTCTGAGGCAGGGGTCATGTTGCCAGA
GCAACCTGCACATGATGACATGGATGAAGATGACAATGGCTCACTGGGTGGGCCGGATAGTCCCGACTCT
GTGGATCCTGTCGAACCGATGCCAACTATGACTGATCAGACAACTCTCGTCCCAAACGAGGAAGAAGCTT
TTGCGTTGGAGCCCATTGATATAACTGTCAAAGAGACAAAAGCCAAGAGGAAGAGGAAGCTGATTGTTGA
CAGTGTCAAAGAATTGGATAGTAAGACCATTAGAGCCCAGCTTAGCGATTATTCTGATATTGTTACGACT
CTGGACCTGGCTCCGCCAACCAAGAAGCTTATGATGTGGAAAGAGACAGGAGGAGTGGAAAAGCTCTTCT
TTTTACCAGCACAGCCCCTGTGGAATAACCGGCTACTGAAGCTCTTCACACGCTGCCTTACCCCACTTGT
ACCAGAAGACCTTAGGAAGAGAAGGAAAGGGGGAGAGGCAGATAATCTGGATGAGTTCCTCAAAGAGTTT
GAGAATCCAGAGGTTCCCAGAGAGGAGCAGCAGCCACAGCAGCAGCAGCCACAGCCGCAGCGAGATGTCA
TCGATGAGCCCATTATAGAAGAGCCAAGCCGCCTCCAGGACTCAGTGATGGAGGCCAGCAGAACAACCAT
AGAAGAATCAGCCATGCCCCCACCACCCCCTCAAGGAGTTAAGCGGAAAGCCGGGCAAATAGACCCAGAG
CCTTCGATACCTCCTCAGCAGGTAGAGCAAATGGAAATACCACCAGTAGAACTTCCCCCAGAGGAGCCTC
CAAATATCTGTCAGCTGATCCCGGAGTTAGAGCTCCTACCGGAGAAGGAGAAGGAAAAAGAGAAGGAGAA
GGAAGAGGAGGAGGAGGAGGAGGATGAAGATGCTTCAGGGGGTGATCAGGATCAAGAGGAAAGGAGATGG
AACAAACGCACTCAGCAGATGCTTCATGGTCTTCAGCGAGCTCTTGCTAAAACTGGAGCAGAGTCTATCA
GTTTGCTTGAGCTGTGTCGAAACACAAACCGAAAGCAGGCAGCAGCAAAGTTCTACAGCTTTTTGGTTCT
TAAGAAGCAGCAAGCCATCGAGCTCACACAGGAAGAGCCGTACAGTGACATCATTGCAACCCCTGGACCA
CGGTTCCATATTATCTGA

Translation (635 aa):
MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLLLGVVRIYHRK
AKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQPLPDLDDIDVAQQFSLNQSRV
EEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDDDMLVSTSASNLLLEPEQSTSNLNEKMNHLE
YEDQYKDDNFGEGNDGGILDDKLISNNDGGIFDDPPALSEAGVMLPEQPAHDDMDEDDNGSLGGPDSPDS
VDPVEPMPTMTDQTTLVPNEEEAFALEPIDITVKETKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTT
LDLAPPTKKLMMWKETGGVEKLFFLPAQPLWNNRLLKLFTRCLTPLVPEDLRKRRKGGEADNLDEFLKEF
ENPEVPREEQQPQQQQPQPQRDVIDEPIIEEPSRLQDSVMEASRTTIEESAMPPPPPQGVKRKAGQIDPE
PSIPPQQVEQMEIPPVELPPEEPPNICQLIPELELLPEKEKEKEKEKEEEEEEEDEDASGGDQDQEERRW
NKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGP
RFHII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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