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Report for CCDS27596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27596.1 Public Mus musculus 15 Zfp647 23 108 98 CCDS HistoryNCBI Gene:239546Re-query CCDS DB by CCDS ID:27596.1Re-query CCDS DB by GeneID:239546See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048854.7 ENSMUSP00000041575.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048854.7Link to Ensembl Protein Viewer:ENSMUSP00000041575.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048854Re-query CCDS DB by Protein ID:ENSMUSP00000041575
Original member Current member EBI ENSMUST00000229055.1 ENSMUSP00000155685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229055.1Link to Ensembl Protein Viewer:ENSMUSP00000155685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229055Re-query CCDS DB by Protein ID:ENSMUSP00000155685
Original member NCBI NM_001168276.1 NP_001161748.1 Updated not alive Link to Nucleotide Sequence:NM_001168276.1Link to Protein Sequence:NP_001161748.1Re-query CCDS DB by Nucleotide ID:NM_001168276Re-query CCDS DB by Protein ID:NP_001161748
Current member NCBI NM_001168276.2 NP_001161748.1 Accepted alive Link to Nucleotide Sequence:NM_001168276.2Link to Protein Sequence:NP_001161748.1Re-query CCDS DB by Nucleotide ID:NM_001168276Re-query CCDS DB by Protein ID:NP_001161748Link to BLAST:NP_001161748.1
Original member NCBI NM_172817.3 NP_766405.2 Updated not alive Link to Nucleotide Sequence:NM_172817.3Link to Protein Sequence:NP_766405.2Re-query CCDS DB by Nucleotide ID:NM_172817Re-query CCDS DB by Protein ID:NP_766405
Current member NCBI NM_172817.4 NP_766405.2 Accepted alive Link to Nucleotide Sequence:NM_172817.4Link to Protein Sequence:NP_766405.2Re-query CCDS DB by Nucleotide ID:NM_172817Re-query CCDS DB by Protein ID:NP_766405Link to BLAST:NP_766405.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161748.1 535 Q7TNU6 535 100% 0 0
NP_766405.2 535 Q7TNU6 535 100% 0 0

Chromosomal Locations for CCDS 27596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76910851 76912175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76917290 76917403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76917635 76917761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76917969 76918010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGCAGCAGCCGGGCTTCTACCGCTGCCAGCAGCACCACAGGCCAAAGTGACCTTTGAGGATGTGGCTG
TTCTGCTGTCTCAGGAGGAGTGGGCCCGCCTGGGCCCTGCTCAGCGGGGCCTCTACCGACACGTCATGAT
GGAGACCTACGGGAATGTAGTCTCACTGGGACTTCCAGGATCTAAGCCTGTTGTGATCTCCCAGCTGGAG
CGAGGAGAAGACCCGTGGGTCCTGGATGGACAGGGAACCGAGCTGAGCCAGAGCCTGGGAAGTGACCACT
CAGAATGCAAAGCCAAGGAAGAGAACCAAAACACAGACTTGAATGTGCCACCATTAATCTCAGACGAAGC
ATCAGCGACGCTGACGGAAACACCGCTGAGGAAGGTTGCTGAAGAACGTTACAAAACAGAACCGAAGGTC
TGCCCCAGTCCAAAGCCCATTGGCCCCCAGAATGCCCACGGGTTGAACCCTAGTGTACCCGTTGCCCGAC
CCCAGACGGCTCCCAGTGTTGAGAGACCCTATATCTGCATTGAGTGTGGAAAGTGCTTTGGTCGGAGCTC
CCATCTCCTTCAGCATCAGCGAATACACACTGGCGAGAAGCCCTACGTATGCCATGTATGCGGAAAGGCT
TTCAGCCAGAGTTCCGTCCTGAGCAAGCACAGGCGGATCCACACGGGCGAGAAGCCCTACGAGTGTAACG
AATGTGGGAAAGCCTTTCGCGTGAGTTCCGACCTTGCCCAGCACCACAAGATCCACACCGGAGAGAAGCC
TCACGAGTGTCTGGAATGTGGGAAGGCGTTCACCCAGCTCTCCCACCTCATCCAACATCAGCGGATCCAC
ACGGGGGAGCGGCCCTACGTGTGTCCCTTGTGTGGGAAAGCCTTCAACCACAGCACCGTCCTGCGGAGCC
ACCAGAGGGTGCACACTGGGGAGAAGCCTCACGGGTGCAGCGAGTGTGGGAAGACCTTCAGCGTGAAGAG
GACGCTGCTGCAGCACCAGCGGGTGCACACCGGGGAGAAGCCCTACACGTGCAGCGAGTGCGGGAAGGCC
TTCAGCGACCGCTCCGTGCTCATCCAACATCACAACGTACACACTGGGGAGAAGCCGTACGAGTGCAGCG
AGTGCGGCAAGACCTTTAGCCACCGCTCCACCCTGATGAATCACGAGAGGATTCACACGCAGGAGAAGCC
CTACGCGTGCTACGAGTGCGGGAAGGCCTTTGTCCAGCACTCGCATCTCATCCAGCATCAGAGAGTCCAC
ACGGGAGAGAAACCCTACGTGTGTGGCGAGTGTGGCCATGCTTTCAGCGCACGCCGGTCCCTGATCCAGC
ATGAGCGAATCCACACAGGCGAGAAACCCTTTCAGTGCACAGAGTGTGGCAAAGCCTTCAGCCTGAAAGC
AACTCTGATCGTGCACCTGAGGACCCACACGGGCGAGAAACCCTATGAGTGCAATAGCTGCGGCAAGGCG
TTCAGCCAGTACTCGGTGCTCATCCAACACCAGAGGATCCACACCGGAGAGAAACCCTATGAGTGTGGCG
AGTGCGGACGGGCCTTCAACCAGCACGGCCACCTGATCCAACATCAGAAAGTACACAAGAAGCTGTGA

Translation (535 aa):
MAAAGLLPLPAAPQAKVTFEDVAVLLSQEEWARLGPAQRGLYRHVMMETYGNVVSLGLPGSKPVVISQLE
RGEDPWVLDGQGTELSQSLGSDHSECKAKEENQNTDLNVPPLISDEASATLTETPLRKVAEERYKTEPKV
CPSPKPIGPQNAHGLNPSVPVARPQTAPSVERPYICIECGKCFGRSSHLLQHQRIHTGEKPYVCHVCGKA
FSQSSVLSKHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHECLECGKAFTQLSHLIQHQRIH
TGERPYVCPLCGKAFNHSTVLRSHQRVHTGEKPHGCSECGKTFSVKRTLLQHQRVHTGEKPYTCSECGKA
FSDRSVLIQHHNVHTGEKPYECSECGKTFSHRSTLMNHERIHTQEKPYACYECGKAFVQHSHLIQHQRVH
TGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQCTECGKAFSLKATLIVHLRTHTGEKPYECNSCGKA
FSQYSVLIQHQRIHTGEKPYECGECGRAFNQHGHLIQHQKVHKKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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