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Report for CCDS27647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27647.1 Public Mus musculus 15 Josd1 23 108 98 CCDS HistoryNCBI Gene:74158Re-query CCDS DB by CCDS ID:27647.1Re-query CCDS DB by GeneID:74158See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023061.6 ENSMUSP00000023061.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023061.6Link to Ensembl Protein Viewer:ENSMUSP00000023061.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023061Re-query CCDS DB by Protein ID:ENSMUSP00000023061
Original member Current member NCBI NM_028792.3 NP_083068.1 Accepted alive Link to Nucleotide Sequence:NM_028792.3Link to Protein Sequence:NP_083068.1Re-query CCDS DB by Nucleotide ID:NM_028792Re-query CCDS DB by Protein ID:NP_083068Link to BLAST:NP_083068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083068.1 202 Q9DBJ6 202 100% 0 0

Chromosomal Locations for CCDS 27647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79676080 79676179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79677097 79677291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79677399 79677527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79686733 79686917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGAGTTGCGTGCCATGGAAAGGAGACAAGGCCAAAGCTGAATCCTCGGACCTTCCCCAAGCAGCGCCCC
CACAAATCTACCATGAGAAGCAGCGCAGGGAGCTCTGTGCTCTTCATGCTCTCAACAACGTCTTCCAGGA
CAGCAACGCCTTCACGCGGGAAACGCTGCAGGAGATTTTCCAGAGGCTGTCTCCGAACACTATGGTGACG
CCCCACAAGAAGAGCATGCTGGGAAATGGGAACTATGATGTGAATGTCATCATGGCAGCACTTCAAACCA
AAGGCTATGAAGCTGTTTGGTGGGACAAGCGAAGGGACGTGGGTGTCATTGCTCTTACTAATGTCATGGG
CTTCATCATGAACCTGCCCTCCAGCCTCTGCTGGGGTCCACTCAAGTTGCCTCTCAAAAGACAGCACTGG
ATCTGTGTTCGTGAGGTGGGAGGGGCCTACTACAACCTTGACTCCAAACTCAAGATGCCAGAGTGGATTG
GAGGCGAGAGTGAGCTCAGGAAATTTCTAAAATACCATTTGCGAGGTAAAAACTGTGAACTCCTACTGGT
TGTACCGGAAGAAGTGGAAGCCCATCAGAGCTGGAGGGCCGACGTGTGA

Translation (202 aa):
MSCVPWKGDKAKAESSDLPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMVT
PHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW
ICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLVVPEEVEAHQSWRADV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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