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Report for CCDS27762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27762.1 Public Mus musculus 15 Smgc 23 108 98 CCDS HistoryNCBI Gene:223809Re-query CCDS DB by CCDS ID:27762.1Re-query CCDS DB by GeneID:223809See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27762.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088555.9 ENSMUSP00000085915.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088555.9Link to Ensembl Protein Viewer:ENSMUSP00000085915.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088555Re-query CCDS DB by Protein ID:ENSMUSP00000085915
Original member Current member NCBI NM_198927.3 NP_945121.1 Accepted alive Link to Nucleotide Sequence:NM_198927.3Link to Protein Sequence:NP_945121.1Re-query CCDS DB by Nucleotide ID:NM_198927Re-query CCDS DB by Protein ID:NP_945121Link to BLAST:NP_945121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945121.1 733 Q6JHY2-1 733 100% 0 0

Chromosomal Locations for CCDS 27762.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 91838369 91838420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91841332 91841463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91841899 91842081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91842451 91842513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91844351 91844521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91845446 91845535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91847046 91847144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91847915 91848085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91849029 91849118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91850560 91850658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91851429 91851599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91852543 91852632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91854552 91854650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91856552 91856638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91858619 91858717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91859639 91859809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91860270 91860449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91860547 91860701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGAAGCTGATACTTCTGTACCTGGCTGTGGTGCTCTGCTTTGTTGGCAAAGCTAGATCTTTCAGAAATG
GAGCTGGCTTCTATACTTCCCTAGGCGGTCAAATGAGAGTCTTTGATTTTAATAAAAAGACTCTGGATGC
CAAGAGTTCTGGTGGGAGCAAAGATTACAATCTGTCTGATGGAGGTAAAAGTAACTCGAGAAAGAATCTT
AGTCCTGCTACTGGTGGCTCTGCAACACAACAGTCTAATTTAGATGACTCTCATGCACCCAATCTTGGAA
AAAGTGAAACTATGCTGAGTCTGTTAGGTTACCTGGGAGCTTTTCGCCCTGTGCTTAGTGGCCTTACGTC
TCTGCCCAGAGTAGGAGGTGGTGCCCATGGTAATATCGGTTTAAGAGCTGAAATCAGCAGAAATGGTGTC
AACCTGTCAGGTGACTCAAGTGCAAGAGGTAGTCTGAATGTGAATCCGTTAAGTGGACTCTCCACCAAGT
CAGGAAATGATGCCACCGTCCAGGGTCAACAAGCAGCTGCATCTGGTGGCTCTAAGCACAATGTAGAGAA
TAGCAGTTTATCTACAGGCTCTGCAACCTCCAACAAAGGAGCTGACAAACCAAGTGAACATCTGAGTAAC
CTTTTCCTTAAAGGACTGAAAGGAATAGTCGAACCGATCACAAGTGCTGCTGGTGGCTCAGTTTCTTCGG
CTGTCGAGAATCTTAAAGCACAAATAAAAAAATTCATAGAGCCCCTGACAGAGGATCATGGACCAACAAG
CACTAGTGCCAGTGTCTCAGGTGACTCAAGTACAAGCAGTAGGCTGGATGGGCATTCATCAGATGGACTC
TCCAAGGTGTCAGGAGATGATCCCACAGTCCAGGGTCACGATGTAGCTGCATCTGATGGCTCTAAGCAGA
ATGTAGAGGATAGCACTTTATCTACAGGCTCTGCAACCTCCAATGAAGGAGATGACAAATCTAGTGACAA
TTCAAGTAACACTTTCAGGGAAGATTTGGAAAAAATATTAGAACAGATCACAAGTGCTCCTGGTGGCTCA
GTTTCTTCGGCTGTCGAGAATCTTAAAGCACAAATAAAAAAATTCATAGAGCCCCTGACAGAGGATCATG
GACCAACAAGCACTAGTGCCAGTGTCTCAGGTGACTCAAGTACAAGCAGTAGGCTGGATGGGCATTCATC
AGATGGACTCTCCAAGGTGTCAGGAGATGATCCCACAGTCCAGGGTCACGATGTAGCTGCATCTGATGGC
TCTAAGCAGAATGTAGAGGATAGCACTTTATCTACAGGCTCTGCAACCTCCAATGAAGGAGATGACAAAT
CTAGTGACAATTCAAGTAACACTTTCAGGGAAGATTTGGAAAAAATATTAGAACAGATCACAAGTGCTCC
TGGTGGCTCAGTTTCTACAGTTAACAACCCTGATGAAGATAGACTCATAAGCATCATAGAGAACTTAGCT
GGCCACATTCAACAGTCTGTCACTGAAGCCAGTCAATCAGCTGAAAGGCCTAATGCACAATCAAGCAACA
ACTTGTCAGGAAAATTGGAACCAAAGTATGAGAACCCGACTAATGGCAGTAGCTCAGCTTCTTCAGCTGA
CAAGCCTTATGAAGAGGGAATGAGAAAATTGTTAAAGTTCTTAGAAGAGCAATATGGACAAACAGGAACT
GATGCCAGTGTCTCAGGAATGTCAAGTGAAAGTAGTAGGTCGAATGTGCATCTATCAGATGGATTCTCCA
TGGAGTCAGGAGATGATGCCACAGTCCAGGGTCAACAAGCAGCTGCATCTGGTGGCCCTAAGCAGAATGT
AGAGAGCAGCAATTCATCTACAGGCTCTGCAACCTCCAATGGAGGAGGTGACTCCAATGAAGTAAGAGGG
CCAAGCTCCTCAGCAGTAGACTCCACAGATTCAGGAGACCGTGGGAATCTGGCTGATAAACAAGGACCTG
GGTTTAATGGACCTGAGGGGGTTGGAGAGAATAATGGTGGATCTTTCAGGGCTGGAAGCTTGGATACTGG
AAGTAAGAGTGACTCAGGAAGCCATAATTTGTCTTCTGGGTCTGGAAGTAGAAGTAATGTTTCCACTGGT
GGTGAACCTTCTGACAAAAACGAACCTGCTGACCCTGGTGTTAGTGGCAGAGTTACCTGTCCTACTGGCA
AGACCCAATCTGGATCTCCTTCTGTGGCTTAG

Translation (733 aa):
MKLILLYLAVVLCFVGKARSFRNGAGFYTSLGGQMRVFDFNKKTLDAKSSGGSKDYNLSDGGKSNSRKNL
SPATGGSATQQSNLDDSHAPNLGKSETMLSLLGYLGAFRPVLSGLTSLPRVGGGAHGNIGLRAEISRNGV
NLSGDSSARGSLNVNPLSGLSTKSGNDATVQGQQAAASGGSKHNVENSSLSTGSATSNKGADKPSEHLSN
LFLKGLKGIVEPITSAAGGSVSSAVENLKAQIKKFIEPLTEDHGPTSTSASVSGDSSTSSRLDGHSSDGL
SKVSGDDPTVQGHDVAASDGSKQNVEDSTLSTGSATSNEGDDKSSDNSSNTFREDLEKILEQITSAPGGS
VSSAVENLKAQIKKFIEPLTEDHGPTSTSASVSGDSSTSSRLDGHSSDGLSKVSGDDPTVQGHDVAASDG
SKQNVEDSTLSTGSATSNEGDDKSSDNSSNTFREDLEKILEQITSAPGGSVSTVNNPDEDRLISIIENLA
GHIQQSVTEASQSAERPNAQSSNNLSGKLEPKYENPTNGSSSASSADKPYEEGMRKLLKFLEEQYGQTGT
DASVSGMSSESSRSNVHLSDGFSMESGDDATVQGQQAAASGGPKQNVESSNSSTGSATSNGGGDSNEVRG
PSSSAVDSTDSGDRGNLADKQGPGFNGPEGVGENNGGSFRAGSLDTGSKSDSGSHNLSSGSGSRSNVSTG
GEPSDKNEPADPGVSGRVTCPTGKTQSGSPSVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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