NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27826.1 Public Mus musculus 15 Asic1 23 108 98 CCDS HistoryNCBI Gene:11419Re-query CCDS DB by CCDS ID:27826.1Re-query CCDS DB by GeneID:11419See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023758.8 ENSMUSP00000023758.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023758.8Link to Ensembl Protein Viewer:ENSMUSP00000023758.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023758Re-query CCDS DB by Protein ID:ENSMUSP00000023758
Original member Current member NCBI NM_009597.2 NP_033727.1 Accepted alive Link to Nucleotide Sequence:NM_009597.2Link to Protein Sequence:NP_033727.1Re-query CCDS DB by Nucleotide ID:NM_009597Re-query CCDS DB by Protein ID:NP_033727Link to BLAST:NP_033727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033727.1 526 Q6NXK8-1 526 100% 0 0

Chromosomal Locations for CCDS 27826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99671800 99672161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99672868 99673063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99694694 99694844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99695473 99695600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99696512 99696662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99696972 99697028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99697439 99697592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99698047 99698138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99698630 99698709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99698795 99698899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99699034 99699138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGAACTGAAGACCGAGGAGGAGGAGGTGGGTGGTGTCCAGCCGGTGAGCATCCAGGCTTTTGCCAGCA
GCTCCACGCTGCACGGTCTTGCCCACATCTTCTCCTATGAGCGGCTGTCTCTGAAGCGGGCACTGTGGGC
CCTGTGTTTCCTGGGTTCGCTGGCCGTCCTGCTGTGTGTGTGCACTGAGCGTGTGCAGTACTACTTCTGC
TACCACCACGTCACCAAGCTCGACGAGGTGGCTGCCTCCCAGCTCACCTTCCCTGCCGTCACTCTCTGCA
ACCTCAATGAGTTTCGCTTTAGCCAAGTCTCCAAGAATGACCTGTACCATGCTGGGGAACTGCTGGCCCT
GCTCAACAACAGGTATGAGATACCGGACACACAGATGGCTGATGAAAAGCAGCTGGAGATATTGCAGGAC
AAGGCCAACTTCCGTAGCTTCAAGCCCAAGCCCTTCAACATGCGTGAGTTCTACGACAGAGCAGGGCATG
ACATTCGAGACATGCTTCTCTCGTGCCACTTCCGAGGGGAGGCCTGCAGCGCTGAAGACTTCAAAGTGGT
CTTCACGCGGTATGGGAAGTGCTACACATTCAACTCGGGCCAAGATGGGCGGCCACGGCTGAAGACCATG
AAAGGTGGGACTGGCAACGGCCTGGAGATCATGCTGGACATTCAGCAAGATGAATACTTGCCTGTGTGGG
GAGAGACTGATGAGACATCGTTCGAAGCAGGCATCAAAGTGCAGATCCACAGTCAGGACGAGCCTCCTTT
CATCGACCAGCTGGGCTTTGGCGTGGCCCCAGGCTTCCAGACGTTTGTGTCTTGCCAGGAGCAGAGGCTC
ATCTACCTGCCCTCCCCCTGGGGCACCTGCAATGCTGTTACCATGGACTCGGATTTCTTCGACTCCTACA
GCATCACGGCCTGCCGGATTGATTGTGAAACCCGTTACCTGGTGGAAAACTGCAACTGCCGTATGGTGCA
CATGCCAGGGGATGCCCCATACTGTACTCCGGAGCAGTACAAGGAGTGTGCAGACCCTGCCCTGGACTTC
CTAGTGGAGAAAGACCAGGAATACTGTGTGTGTGAGATGCCCTGCAACCTGACCCGCTACGGCAAGGAGC
TGTCCATGGTCAAGATCCCCAGCAAAGCCTCAGCCAAGTACCTGGCCAAGAAGTTCAACAAATCTGAACA
GTACATAGGGGAGAATATTCTGGTGCTGGACATTTTCTTTGAAGTCCTCAACTATGAGACCATCGAGCAG
AAGAAGGCCTATGAGATCGCAGGGCTTTTGGGTGACATCGGGGGCCAGATGGGATTGTTCATCGGGGCCA
GCATCCTCACAGTGCTGGAACTCTTTGACTATGCCTATGAGGTCATTAAGCACCGGCTGTGTAGACGTGG
GAAGTGCCAGAAGGAGGCTAAGAGGAACAGCGCAGATAAGGGCGTGGCGCTCAGCCTGGATGACGTCAAA
AGACACAATCCCTGCGAGAGCCTCCGAGGACATCCTGCCGGGATGACGTACGCTGCCAACATCCTACCTC
ACCATCCCGCTCGAGGCACGTTTGAGGACTTTACCTGCTAA

Translation (526 aa):
MELKTEEEEVGGVQPVSIQAFASSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFC
YHHVTKLDEVAASQLTFPAVTLCNLNEFRFSQVSKNDLYHAGELLALLNNRYEIPDTQMADEKQLEILQD
KANFRSFKPKPFNMREFYDRAGHDIRDMLLSCHFRGEACSAEDFKVVFTRYGKCYTFNSGQDGRPRLKTM
KGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLGFGVAPGFQTFVSCQEQRL
IYLPSPWGTCNAVTMDSDFFDSYSITACRIDCETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDF
LVEKDQEYCVCEMPCNLTRYGKELSMVKIPSKASAKYLAKKFNKSEQYIGENILVLDIFFEVLNYETIEQ
KKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVIKHRLCRRGKCQKEAKRNSADKGVALSLDDVK
RHNPCESLRGHPAGMTYAANILPHHPARGTFEDFTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH