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Report for CCDS27971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27971.1 Public Mus musculus 16 Bmerb1 23 108 98 CCDS HistoryNCBI Gene:67254Re-query CCDS DB by CCDS ID:27971.1Re-query CCDS DB by GeneID:67254See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056521.11 ENSMUSP00000062758.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056521.11Link to Ensembl Protein Viewer:ENSMUSP00000062758.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000056521Re-query CCDS DB by Protein ID:ENSMUSP00000062758
Original member Current member NCBI NM_144518.3 NP_653101.1 Accepted alive Link to Nucleotide Sequence:NM_144518.3Link to Protein Sequence:NP_653101.1Re-query CCDS DB by Nucleotide ID:NM_144518Re-query CCDS DB by Protein ID:NP_653101Link to BLAST:NP_653101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653101.1 203 Q8R1Y2 203 100% 0 0

Chromosomal Locations for CCDS 27971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13986791 13986893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14049383 14049506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14088946 14089019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14093889 14094003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14095904 14095986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14099793 14099905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGAGTTAAAGCAATCTCTGTCTGTTCATCTGGAAGCCGAGAAGCCTCTCAGGCGTTATGGGGCGGTGG
AGGAGACAGCATGGAAAGCGGAGGGACTGGGAAGCCAGCTAGACATCATCTCCATGGCTGAGACCAGCAT
GATGCCAGAGGAGATCGAGCTGGAGATGGCGAAAATCCAGCGTCTCCGTGAAGTCCTGGTCCGTCGAGAG
TCAGAACTCAGGTTCATGATGGATGACATTCAGCTCTGCAAGGACATCATGGACCTGAAGCAGGAGCTGC
AGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAGCTGCAGAAGCAGAGAGAGGATGAGCTCATCCA
GAAGATCCACAGACTGGTACAGAAGAGAGACTTCCTGGTGGATGATGCCGAGGTGGAACGCTTAAGGGAA
CAGGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCAAGA
CTTCAGCCAGCTCCCGGGCAGAGAAGAAGGCAGAGCCCCCACCTAGCAAGCCAACAGTGGCCAAGACAGG
GCTGGCACTCATCAAGGATTGCTGTGGGACCACCCAGTGCAACATCATGTAG

Translation (203 aa):
MELKQSLSVHLEAEKPLRRYGAVEETAWKAEGLGSQLDIISMAETSMMPEEIELEMAKIQRLREVLVRRE
SELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQREDELIQKIHRLVQKRDFLVDDAEVERLRE
QEEDKEMADFLRIKLKPLDKVTKTSASSRAEKKAEPPPSKPTVAKTGLALIKDCCGTTQCNIM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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