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Report for CCDS27987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27987.1 Public Mus musculus 16 Or7a40 23 108 98 CCDS HistoryNCBI Gene:18316Re-query CCDS DB by CCDS ID:27987.1Re-query CCDS DB by GeneID:18316See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057886.5 ENSMUSP00000053393.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057886.5Link to Ensembl Protein Viewer:ENSMUSP00000053393.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057886Re-query CCDS DB by Protein ID:ENSMUSP00000053393
Original member Current member EBI ENSMUST00000206365.2 ENSMUSP00000145655.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206365.2Link to Ensembl Protein Viewer:ENSMUSP00000145655.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000206365Re-query CCDS DB by Protein ID:ENSMUSP00000145655
Original member Current member NCBI NM_146335.1 NP_666447.1 Accepted alive Link to Nucleotide Sequence:NM_146335.1Link to Protein Sequence:NP_666447.1Re-query CCDS DB by Nucleotide ID:NM_146335Re-query CCDS DB by Protein ID:NP_666447Link to BLAST:NP_666447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666447.1 309 Q9JHB2 309 100% 0 0

Chromosomal Locations for CCDS 27987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16673050 16673979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAGTTGAAAAATGACACACAAATTTCAAAATTTATTCTCCTGGGAATTTCAGAGGATCCTCTATGGC
AACCTTTCCTTTTTGGACTATTTTTGTTCATGTACTTGGTCACTCTGCTTGGGAACCTTCTCATTATCAT
TGCCACCATTACAGATTCCCATCTTCACACACCCATGTACTTCTTCCTTTCCAACCTGTCCTTTGCAGAC
ATCTGCTTTACTTCTGCTAGCATCCCAAAGATGCTAGTGAATATACAGACAAAGAACAAGGTGATAACCT
ATGAAGGTTGCATTTCTCAAGTATTCTTTTTCATACTATTTGGAGTTTTAGATAACTTTCTTCTAGCTGT
GATGGCCTATGACCGATATGTGGCAATCTGTCACCCTCTGCACTATATGGTCATCATGAACTGCCGCCTC
TGTGGATTTTTAGTTTTGGGGTCTTGGGTCACAACAGCATTGAATTCCTTGCTGCAGAGTTCAATGGCAC
TGCGGCTGTCCTTTTGTACAGACTTGAAAATTCCCCACTTTGTTTGTGAGCTTAATCAACTGGTACTACT
TGCCTGTAATGACACCTTTCCTAATGACATGGTGATGTACTTTGCAGCTATACTGCTGGGTGGTGGTCCT
CTTGCTGGCATCCTTTACTCTTATTCTAAGATAGTTTCCTCCATACGTGCAATCTCATCATCACAGGGGA
AGTACAAAGCATTCTCCACCTGTGCATCCCACCTCTCAGTTGTTTCATTATTCTATTCTACACTCTTGGG
TGTGTATCTTAGTTCTTCTTTTACACAAAACTCACACTCAACTGCACGAGCATCTGTTATGTACAGTGTG
GTCACCCCCATGTTGAACCCATTCATCTATAGTTTGAGGAATAAGGACCTAATGGGAGCTCTGAGAAGAC
TCTTAAGAAGGAAGTCATGA

Translation (309 aa):
MELKNDTQISKFILLGISEDPLWQPFLFGLFLFMYLVTLLGNLLIIIATITDSHLHTPMYFFLSNLSFAD
ICFTSASIPKMLVNIQTKNKVITYEGCISQVFFFILFGVLDNFLLAVMAYDRYVAICHPLHYMVIMNCRL
CGFLVLGSWVTTALNSLLQSSMALRLSFCTDLKIPHFVCELNQLVLLACNDTFPNDMVMYFAAILLGGGP
LAGILYSYSKIVSSIRAISSSQGKYKAFSTCASHLSVVSLFYSTLLGVYLSSSFTQNSHSTARASVMYSV
VTPMLNPFIYSLRNKDLMGALRRLLRRKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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