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Report for CCDS28013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28013.1 Public Mus musculus 16 Ess2 23 108 98 CCDS HistoryNCBI Gene:27886Re-query CCDS DB by CCDS ID:28013.1Re-query CCDS DB by GeneID:27886See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003621.9 ENSMUSP00000003621.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003621.9Link to Ensembl Protein Viewer:ENSMUSP00000003621.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003621Re-query CCDS DB by Protein ID:ENSMUSP00000003621
Original member Current member NCBI NM_022408.2 NP_071853.2 Accepted alive Link to Nucleotide Sequence:NM_022408.2Link to Protein Sequence:NP_071853.2Re-query CCDS DB by Nucleotide ID:NM_022408Re-query CCDS DB by Protein ID:NP_071853Link to BLAST:NP_071853.2

Chromosomal Locations for CCDS 28013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17902044 17902323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17902818 17902933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17905002 17905111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17906271 17906373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17907109 17907242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17907520 17907637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17907750 17907922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17909905 17910000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17910088 17910256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17911162 17911305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGGGACGCCCGGGACCTCGGCGGGTGCTCTGTTTCTGTCCTCCGCGTCCGCGCCCTCAAGGAAGCGCG
CGGCTGGGGAGGCTGGAGAGGCCGGAGTTGCGAGAAGCAGGCAGCGGGTCCTGGATGAAGAAGAGTACAT
CGAGGGACTTCAGACAGTTATCCAGAGAGACTTCTTCCCTGATGTGGAGAAGCTACAGGCACAGAAGGAG
TACCTGGAGGCCGAGGAAAACGGAGATTTGGAGCGCATGCGCCAGATTGCCATCAAGTTTGGCTCTGCCC
TGGGCAAGATATCTCGGGAACCTCCACCACCCTATGTTACTCCAGCCACCTTTGAAACTCCTGAGGTACA
CCCAGGCTCTGCTGTGCTGGGCAACAAGCCCCGGCCCCAGGGCCGAGACCTAGATGATGCAGGAGAGGCT
GGAGAGGAAGAGGAGAAGGAGCCACTGCCCAGCCTGGATGTCTTCTTGAGCCAGTACACAAGTGAGGACA
ATGCCTCCTTCCAGGAGATCATGGAGGTGGCCAAGGAAAAAAGCCATGCACGGCACGCGTGGCTCTACCA
GGCTGAGGAGGAATTTGAGAAGCGACAGAAAGATAATCTTGAACTCCCATCGGCAGAGCATCAAGCCATT
GAGAGCAGTCAGGCTGGAGTGGAGACCTGGAAGTACAAGGCCAAGAACTCTCTCATGTACTATCCCGAGG
GTGTCCCTGATGAAGAGCAGTTGTTTAAGAAGCCGAGACAGATAGTACATAAGAACACACGTTTCCTCCG
AGATCCCTTCAGTCAGGCTTTGAGCAGGTCCCAGCTTCAGCAGGCGGCTGCCCTCAATGCCCAGCACAAA
CAGGGCAAGGTCGGCCCTGACGGCAAGGAACTCATTCCCCAGGAGTCCCCCAGAGTGGGCGGCTTTGGAT
TTGTTGCCACTCCTTCTCCTGCTCCTGGTGTGAATGAGTCCCCACTGATGACATGGGGAGAGGTTGAGAA
CACGCCCCTGCGAGTAGAAGGATCCGAGAGCCCCTATGTGGACAGGACACCTGGACCCACATTCAAGATC
TTGGAGCCAGGACGCAGGGAGCGTCTGGGCCTGAAGATGGCCAATGAAGCGGCTGCCAAAAACCGGGCGA
AGAAGCAGGAAGCGTTGCGGAGAGTTACAGAGAACTTGGCCAGTCTTACTCCCAAAGGCTTGAGCCCAGC
CATGTCCCCAGCCCTACAGCGCCTCGTAAGCAGGACAGCCAGCAAGTACACAGATCGTGCCCTGCGGGCC
AGCTATACACCATCCCCAGCACGATCTTCCCACCTCAAGACCCCAGCTGGTGGGCCGCAGACACCCACAA
GCACTCCAGCCCCTGGGTCTGCTACACGCACACCCCTCACACAGGACCCAGCCTCCATCACAGACAACCT
GCTGCAGCTCCCTGCCCGACGCAAAGCTTCAGACTTCTTTTAG

Translation (480 aa):
MGTPGTSAGALFLSSASAPSRKRAAGEAGEAGVARSRQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKE
YLEAEENGDLERMRQIAIKFGSALGKISREPPPPYVTPATFETPEVHPGSAVLGNKPRPQGRDLDDAGEA
GEEEEKEPLPSLDVFLSQYTSEDNASFQEIMEVAKEKSHARHAWLYQAEEEFEKRQKDNLELPSAEHQAI
ESSQAGVETWKYKAKNSLMYYPEGVPDEEQLFKKPRQIVHKNTRFLRDPFSQALSRSQLQQAAALNAQHK
QGKVGPDGKELIPQESPRVGGFGFVATPSPAPGVNESPLMTWGEVENTPLRVEGSESPYVDRTPGPTFKI
LEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRA
SYTPSPARSSHLKTPAGGPQTPTSTPAPGSATRTPLTQDPASITDNLLQLPARRKASDFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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