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Report for CCDS28034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28034.1 Public Mus musculus 16 Or2l13 23 108 98 CCDS HistoryNCBI Gene:259071Re-query CCDS DB by CCDS ID:28034.1Re-query CCDS DB by GeneID:259071See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074739.3 ENSMUSP00000074299.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074739.3Link to Ensembl Protein Viewer:ENSMUSP00000074299.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074739Re-query CCDS DB by Protein ID:ENSMUSP00000074299
Original member Current member EBI ENSMUST00000213531.1 ENSMUSP00000150568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213531.1Link to Ensembl Protein Viewer:ENSMUSP00000150568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213531Re-query CCDS DB by Protein ID:ENSMUSP00000150568
Original member Current member EBI ENSMUST00000216465.1 ENSMUSP00000150764.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216465.1Link to Ensembl Protein Viewer:ENSMUSP00000150764.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216465Re-query CCDS DB by Protein ID:ENSMUSP00000150764
Original member Current member NCBI NM_147068.1 NP_667279.1 Accepted alive Link to Nucleotide Sequence:NM_147068.1Link to Protein Sequence:NP_667279.1Re-query CCDS DB by Nucleotide ID:NM_147068Re-query CCDS DB by Protein ID:NP_667279Link to BLAST:NP_667279.1

Chromosomal Locations for CCDS 28034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19486840 19487778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGAAATGGAATCAGAGCTCAAGTGATTTTACTCTGTTAGGACTGCTTCCACAAAACCAAACAGGCC
TGCTACTTTTGATGCTCATCATCTTTGTCTTCTCTCTGGCTTTGTGTGGCAACTCAGGAATGATCCACCT
CATTCGTGTGGATCCAAGGCTCCACACCCCCATGTACTTTCTCCTCAGTCAGCTCTCTCTCATGGACCTG
ATGTACATTTCTACCACTGTTCCCAAGATGGCATTTAACTTCCTTTCTGGCCAGAAAAGCATCTCTTTTC
TGGGCTGTGGAGTGCAATCCTTCTTCTTCCTGACTATGGCATGTTCTGAGGGCTTGCTCTTGGCTTCCAT
GGCTTATGATCGTTTTGTGGCTATCTGCCATCCCCTTCACTATCCCATTCGCATGAGCAAAATAATGTGT
CTGAAGATGATCATAGGATCCTGGATATTGGGCTCAATCAACTCTTTAGCACATACCGTCTATGCCCTTC
ATATTCCTTACTGCCATTCTAGGTCCATTAACCATTTCTTCTGTGATGTTCCAGCCATGTTGCCCCTGGC
CTGTATGGACACTTGGGTTTATGAGTACATGGTGTTTGTGAGCACAAGCCTGTTTCTCCTACTGCCTTTC
CTTGGTATCACAGCTTCCTATGGTCGGGTCCTTTTTGCTGTCTTCCACATGCGCTCAAAAGAGGGAAAGA
AGAAGGCCTTCACCACATGCTCAACTCACTTAACTGTGGTGACATTTTACTATGCACCTTTTGTCTATAC
CTATCTTCGACCTAGGAGTCTTCGCTCCCCAACAGAAGATAAGATTCTGGCTGTTTTCTACACTATCCTT
ACCCCCATGCTCAACCCCATCATTTATAGTCTGAGGAATAAGGAGGTCCTGGGGGCCATGACAAGAGTCC
TTGGTACTTTTCCTTCAACTAAACCGTAA

Translation (312 aa):
MEKWNQSSSDFTLLGLLPQNQTGLLLLMLIIFVFSLALCGNSGMIHLIRVDPRLHTPMYFLLSQLSLMDL
MYISTTVPKMAFNFLSGQKSISFLGCGVQSFFFLTMACSEGLLLASMAYDRFVAICHPLHYPIRMSKIMC
LKMIIGSWILGSINSLAHTVYALHIPYCHSRSINHFFCDVPAMLPLACMDTWVYEYMVFVSTSLFLLLPF
LGITASYGRVLFAVFHMRSKEGKKKAFTTCSTHLTVVTFYYAPFVYTYLRPRSLRSPTEDKILAVFYTIL
TPMLNPIIYSLRNKEVLGAMTRVLGTFPSTKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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