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Report for CCDS28056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28056.1 Public Mus musculus 16 Fam131a 23 108 98 CCDS HistoryNCBI Gene:78408Re-query CCDS DB by CCDS ID:28056.1Re-query CCDS DB by GeneID:78408See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056518.12 ENSMUSP00000060194.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056518.12Link to Ensembl Protein Viewer:ENSMUSP00000060194.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056518Re-query CCDS DB by Protein ID:ENSMUSP00000060194
Original member Current member NCBI NM_133778.2 NP_598539.1 Accepted alive Link to Nucleotide Sequence:NM_133778.2Link to Protein Sequence:NP_598539.1Re-query CCDS DB by Nucleotide ID:NM_133778Re-query CCDS DB by Protein ID:NP_598539Link to BLAST:NP_598539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598539.1 361 Q8BWU3 361 100% 0 0

Chromosomal Locations for CCDS 28056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20695090 20695177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20695739 20695881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20698922 20699015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20699268 20699450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20699629 20699745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20701424 20701884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGCCTATGATTTCTGTGCTGGGCAAAATGTTTCTGTGGCAGCGCGAAGGGCCTGGAGGACGATGGACTT
GTCAGACAAGTCGCAGAGTGGCTTCGGACCCTGCCTGGGCTGTGGAGTGGATCGAACTCCCTCGAGGTCT
CTCTCTGTCCTCCCTGGGATCTGCTCGAACTCTCCGAGGCTGGAGTCGGTCCCCCCGTCCTTCTTCCGTG
GACAGCCAGGACTTGCCAGAGGTGAATGTTGGAGACACAGTCGCGATGCTGCCCAAGTCCCGGAGAGCTC
TAACCATCCAGGAGATCGCTGCACTGGCCAGATCGTCCCTGCATGGTATTTCCCAGGTAGTGAAGGACCA
CGTGACCAAGCCCACAGCCATGGCCCAGGGCCGTGTGGCTCACCTTATTGAATGGAAGGGCTGGAGCAAG
CCTAGTGACTCACCGGCTGCTCTGGAATCAGCCTTTTCCTCCTATTCAGACCTCAGTGAGGGTGAACAAG
AGGCTCGCTTTGCAGCAGGAGTGGCCGAGCAGTTTGCTATTGCAGAAGCCAAGCTCCGGGCATGGTCTTC
AGTGGATGGTGATGACTCCACCGATGATTCTTACGACGAGGACTTTACTGGGGGAATTGACACAGACATG
GCTGGGCCTCTGGGGTCCCACCTCCAGGACCTCTTCACAGGTCGTCGATTCTCCAGGCCTGTGCGCCAGG
GCTCTGTGGAGCCAGAGAGCGACTGTTCACAGACCGTGTCCCCAGATACCCTGTGCTCTAGTCTGTGCAG
CCTGGAGGATGGGTTACTGGGCTCCCCAGCCAGGATGACCTCCCAGCTGTTGGGTGAAGAGCTGCTCCTT
GCCAGGCTGCCCCCCAGCCGGGAAAGTGCCTTCCGCAGCCTGGGTCCTTTGGAGGCCCAGGACTCCCTTT
ACAACTCACCGCTCTCAGAATCCTGCCTTTCCCCTGCCGAGGAGGAGCCTGATTCCTGTAAGGACTGCCA
GCTGCTCTGCCCGCTGCCCACAGGCAGCTGGGAAAGACAGCAGCAAGTCTCTGATGTGGCCTCTTCTGGG
GTGGTATCCTTAGATGAGGATGAGGTGGACCAGTGA

Translation (361 aa):
MPMISVLGKMFLWQREGPGGRWTCQTSRRVASDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSPRPSSV
DSQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSK
PSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSTDDSYDEDFTGGIDTDM
AGPLGSHLQDLFTGRRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARMTSQLLGEELLL
ARLPPSRESAFRSLGPLEAQDSLYNSPLSESCLSPAEEEPDSCKDCQLLCPLPTGSWERQQQVSDVASSG
VVSLDEDEVDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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