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Report for CCDS28081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28081.1 Public Mus musculus 16 Rtp2 23 108 98 CCDS HistoryNCBI Gene:224055Re-query CCDS DB by CCDS ID:28081.1Re-query CCDS DB by GeneID:224055See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061030.9 ENSMUSP00000062178.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061030.9Link to Ensembl Protein Viewer:ENSMUSP00000062178.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061030Re-query CCDS DB by Protein ID:ENSMUSP00000062178
Original member Current member NCBI NM_001008230.3 NP_001008231.1 Accepted alive Link to Nucleotide Sequence:NM_001008230.3Link to Protein Sequence:NP_001008231.1Re-query CCDS DB by Nucleotide ID:NM_001008230Re-query CCDS DB by Protein ID:NP_001008231Link to BLAST:NP_001008231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008231.1 223 Q80ZI2 223 100% 0 0

Chromosomal Locations for CCDS 28081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23927208 23927715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23930535 23930698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGTCCACCAGCCTGACCACTTGTGAGTGGAAGAAGGTCTTCTACGAGAAGATGGAGGTGGCCAAGCCAG
CGGACAGCTGGGAGCTCATCATAGACCCCACCCTCAAGCCCAATGAGCTGGGCCCTGGCTGGAAGCAGTA
CCTGGAGCAACATGCCTCAGGCAGGTTCCACTGTTCCTGGTGTTGGCACACATGGCAATCTGCCAATGTC
GTCATTCTCTTCCACATGCACCTGGACCGTGCCCAGCGTGTTGGCTCAGTGCGCATGCGCGTGTTCAAGC
AGCTGTGCTATCAGTGCGGCACGTCGCGGCTGGACGAGTCCAGCATGCTGGAGGAGAATATCGAGGGCCT
GGTGGACAACCTCATCACCAGTCTGCGCGAGCAGTGTTACGATGAGGATGGTGGCCAGTACCGCATCCAC
GTAGCCAGCCGGCCAGACAGCGGATTGCACCGCAGTGAGTTCTGCGAGGCCTGCCAGGAAGGCATCGTGC
ACTGGAAGCCCAGCGAAAAGCTGCTGGAGGAGGATGCCGCCTATACCGATGCCTCCAAGAAGAAGGGCCA
GGCTGGTTTTATCTCCAGCTTCTTCTCATTTCGTTGGTGCCTGTTCTGGGGCACCCTCTGCCTGGTCATT
GTCTACCTGCAGTTCTTCCGAGGCCGCTCTGGCTTCCTTTAG

Translation (223 aa):
MSTSLTTCEWKKVFYEKMEVAKPADSWELIIDPTLKPNELGPGWKQYLEQHASGRFHCSWCWHTWQSANV
VILFHMHLDRAQRVGSVRMRVFKQLCYQCGTSRLDESSMLEENIEGLVDNLITSLREQCYDEDGGQYRIH
VASRPDSGLHRSEFCEACQEGIVHWKPSEKLLEEDAAYTDASKKKGQAGFISSFFSFRWCLFWGTLCLVI
VYLQFFRGRSGFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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