NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28111.1 Public Mus musculus 16 Senp5 23 108 98 CCDS HistoryNCBI Gene:320213Re-query CCDS DB by CCDS ID:28111.1Re-query CCDS DB by GeneID:320213See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023457.12 ENSMUSP00000023457.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023457.12Link to Ensembl Protein Viewer:ENSMUSP00000023457.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023457Re-query CCDS DB by Protein ID:ENSMUSP00000023457
Original member Current member EBI ENSMUST00000231360.1 ENSMUSP00000156109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231360.1Link to Ensembl Protein Viewer:ENSMUSP00000156109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231360Re-query CCDS DB by Protein ID:ENSMUSP00000156109
Original member Current member NCBI NM_001357087.1 NP_001344016.1 Accepted alive Link to Nucleotide Sequence:NM_001357087.1Link to Protein Sequence:NP_001344016.1Re-query CCDS DB by Nucleotide ID:NM_001357087Re-query CCDS DB by Protein ID:NP_001344016Link to BLAST:NP_001344016.1
Original member Current member NCBI NM_177103.4 NP_796077.2 Accepted alive Link to Nucleotide Sequence:NM_177103.4Link to Protein Sequence:NP_796077.2Re-query CCDS DB by Nucleotide ID:NM_177103Re-query CCDS DB by Protein ID:NP_796077Link to BLAST:NP_796077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344016.1 749 Q6NXL6 749 100% 0 0
NP_796077.2 749 Q6NXL6 749 100% 0 0

Chromosomal Locations for CCDS 28111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31963427 31963537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31964270 31964320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31965745 31965828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31968800 31968937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31977680 31977757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31983264 31983311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31983493 31983631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31983768 31983873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31988940 31990434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGAAAAAACAGAAGAAAATTCTATGGAAGAAAGGAATTCACTTAGCCTTTTCTGAGAAATGGAATGCTG
GGTTTGGAAGCTTTAAGAAGTTCTACTTTCCCCAAAACTTGTGCTTTCTGAAAGCTAAGCTGGGAAGGCC
AGTTGCTTGGCATCGGCAGGTGAAGCATTTCCAGTGTAATAAGGGTCTTCACATCCAGAAAACATGGATT
CAAGATGTACCGTTTTGTTCAAAGACAAAGTCTGGACTGGCTACTCAAAATGTTAGTACTTTGTACCCCA
AAGTGAAAAGAAAGGACAGTAAGCACTTCATTTCCTCCTCAAGGAGTCTCCTGAAACTCCAAGCAGATAA
ATTACTGTCTTCAGCAAAGAGCTTGGACCATAAATACTGCAGAGAGAAAAGCCTTCTGAAGGCAGCTCCT
GGCTTGTCAGCAAACACTGTTTTAGGTAGAGCCAATGGTCACGAACCTACCACAGACCCACAAGCTTCAG
ACTTTCCCATGAAGTTCAGTGGGGAGAGCCAAAGTCCAGGTGACAGTGGCAAGACTGTGGTCTTGAACAA
ACATAGAAAGCGAGTTTGTCATGGCTGCTACCAAGGGCTAGAGCACCACAGGAACAGGAGACCCCTGATT
CCAAAGCAGTTCCAGCTTAACCAACACCGAAGAGTCAGAGCGTCTCTGATGATGTATGAGAAACTATCCA
TGATTAGATTTCGGTATAGGATTTTCAGATCCCAGCACTTCAGAACGAAAAGCAGAGTTTGCAAGCTAAG
AAAGGCCCAGCGAAGTTGGGTACAGAAGGTCACTGGGGACCATCAAGAGAACCTTAGGGATAATAACACT
GAGGGTGACAATTGCAATCCAGTCCCTTCCCTAGAACCTAAAGATCCTTGTCGGTGTCAGCCATACTTTC
CAGACATGGACAGCAGTGCTGTGGGGAAGGGAAAAAACTGTCACGTGCCTGATGGTCACACTAAAGAAAA
CCCTGTATTGGACAAGGAGCATGGTTTAGATGACACATTCCCTGACCAGCAGAATGGCTGTGTTGCATAC
AATTGGGACCAGTCATCCTCTTGTCCTAAGTGGGAATGTACAGAGCAAATTCATGAAATCCCTTTAATGG
AACATCCTTCTAGTGACAAGTTCTCTCCAGAAACTGAAAGAGCACTTATGGCGCTGGGTCAGGAAAGCGG
GACAAGTGCTGTCAGCGATGACAGAGAGAAACTGCCAGTGTCTGGAGCAGACAAATCTGTGAGTAGTGTA
GACGGGCCTGTGTCTGAGGAGCCTGCCCAGAATGAGAACTTCCAGATGGAGGAGGATGGGTCTCTGAAGC
AGAGCATTCTTAGTTCTAAGCTGCTGGACCACCCTTACTGTAAAAGTCCACTGGATGCTCCCTTGCTGTG
CAGTGAACCCAAAGTAGAAAACCAAATGTCAGGTGGCAAGAGCAGCCAGACAGCGTCTCCAGTGGATGAT
GAGCAGCTCTCAACCTGCCTTTCTGGATTCCTAGATGAGGTTATGAAAAAGTATGGAAGTCTGGTCCCAC
TCAGTGAAAAAGATGTCCTTGGGAGATTAAAAGATGTCTTTAATGAAGACTTTTCTAATAGAAAACCATT
CATCAATAGGGAAATAACAAACTACCGGGCCAGACATCAAAAGTGTAACTTCCGCATCTTCTACAATAAG
CACATGCTGGATATGGACGATCTGGCAACTTTGGATGGGCAGAACTGGTTGAATGACCAGGTTATTAATA
TGTATGGCGAGCTGATAATGGATGCAGTCCCAGACAAGGTCCACTTCTTCAACAGCTTTTTCCATAGACA
GCTGGTAACCAAAGGCTATAATGGAGTTAAAAGATGGACGAAGAAGGTGGACTTGTTTAAAAAGAGTCTT
CTGTTGATTCCCATCCACCTGGAGGTCCACTGGTCTCTCATTACTGTGACACTCTCCAGCCGGATTATTT
CATTTTATGATTCCCAAGGCATTCATTTTAAATTCTGTGTAGAGAATATAAGAAAGTATTTGCTGACTGA
AGCCAGAGAAAAAAATAGACCTGAATTTCTTCAGGGTTGGCAGACTGCTGTTACAAAGTGTATTCCACAA
CAGAAAAATGACAGTGACTGTGGAGTCTTTGTGCTCCAGTACTGCAAGTGCCTCGCCCTAGAGCAGCCTT
TCCAGTTTTCTCAAGAAGACATGCCTCGTGTGCGGAAGAGGATCTATAAGGAGCTGTGTGAGTGCCGGCT
CCTGGACTGA

Translation (749 aa):
MKKQKKILWKKGIHLAFSEKWNAGFGSFKKFYFPQNLCFLKAKLGRPVAWHRQVKHFQCNKGLHIQKTWI
QDVPFCSKTKSGLATQNVSTLYPKVKRKDSKHFISSSRSLLKLQADKLLSSAKSLDHKYCREKSLLKAAP
GLSANTVLGRANGHEPTTDPQASDFPMKFSGESQSPGDSGKTVVLNKHRKRVCHGCYQGLEHHRNRRPLI
PKQFQLNQHRRVRASLMMYEKLSMIRFRYRIFRSQHFRTKSRVCKLRKAQRSWVQKVTGDHQENLRDNNT
EGDNCNPVPSLEPKDPCRCQPYFPDMDSSAVGKGKNCHVPDGHTKENPVLDKEHGLDDTFPDQQNGCVAY
NWDQSSSCPKWECTEQIHEIPLMEHPSSDKFSPETERALMALGQESGTSAVSDDREKLPVSGADKSVSSV
DGPVSEEPAQNENFQMEEDGSLKQSILSSKLLDHPYCKSPLDAPLLCSEPKVENQMSGGKSSQTASPVDD
EQLSTCLSGFLDEVMKKYGSLVPLSEKDVLGRLKDVFNEDFSNRKPFINREITNYRARHQKCNFRIFYNK
HMLDMDDLATLDGQNWLNDQVINMYGELIMDAVPDKVHFFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSL
LLIPIHLEVHWSLITVTLSSRIISFYDSQGIHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQ
QKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRIYKELCECRLLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH